Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA2Q9Y261 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
FOXA2Q9Y261 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA2Q9Y261 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA2Q9Y261 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.69■□□□□ 0.9
FOXA2Q9Y261 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA2Q9Y261 AC087741.3-201ENST00000624270 1347 ntBASIC20.69■□□□□ 0.9
FOXA2Q9Y261 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA2Q9Y261 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.68■□□□□ 0.9
FOXA2Q9Y261 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.68■□□□□ 0.9
FOXA2Q9Y261 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA2Q9Y261 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.68■□□□□ 0.9
FOXA2Q9Y261 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA2Q9Y261 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.68■□□□□ 0.9
FOXA2Q9Y261 AC127502.1-201ENST00000399971 1502 ntBASIC20.68■□□□□ 0.9
FOXA2Q9Y261 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 RPS2P35-201ENST00000443417 897 ntBASIC20.67■□□□□ 0.9
FOXA2Q9Y261 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
FOXA2Q9Y261 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.66■□□□□ 0.9
FOXA2Q9Y261 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.66■□□□□ 0.9
FOXA2Q9Y261 AC044849.2-201ENST00000606596 710 ntBASIC20.66■□□□□ 0.9
FOXA2Q9Y261 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
FOXA2Q9Y261 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA2Q9Y261 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
FOXA2Q9Y261 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA2Q9Y261 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA2Q9Y261 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA2Q9Y261 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
FOXA2Q9Y261 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
FOXA2Q9Y261 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA2Q9Y261 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.89
FOXA2Q9Y261 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA2Q9Y261 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA2Q9Y261 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
FOXA2Q9Y261 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA2Q9Y261 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
FOXA2Q9Y261 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA2Q9Y261 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA2Q9Y261 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA2Q9Y261 BX255925.1-201ENST00000566954 1854 ntBASIC20.62■□□□□ 0.89
FOXA2Q9Y261 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
FOXA2Q9Y261 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA2Q9Y261 AC108673.1-201ENST00000510422 1159 ntBASIC20.62■□□□□ 0.89
FOXA2Q9Y261 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.62■□□□□ 0.89
FOXA2Q9Y261 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA2Q9Y261 AL121749.1-202ENST00000609313 2153 ntBASIC20.62■□□□□ 0.89
FOXA2Q9Y261 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
FOXA2Q9Y261 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA2Q9Y261 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA2Q9Y261 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA2Q9Y261 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA2Q9Y261 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA2Q9Y261 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA2Q9Y261 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA2Q9Y261 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.59■□□□□ 0.89
FOXA2Q9Y261 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXA2Q9Y261 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXA2Q9Y261 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA2Q9Y261 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA2Q9Y261 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA2Q9Y261 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
FOXA2Q9Y261 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA2Q9Y261 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
FOXA2Q9Y261 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA2Q9Y261 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
FOXA2Q9Y261 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.55■□□□□ 0.88
FOXA2Q9Y261 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA2Q9Y261 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA2Q9Y261 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA2Q9Y261 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA2Q9Y261 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA2Q9Y261 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.53■□□□□ 0.88
FOXA2Q9Y261 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA2Q9Y261 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA2Q9Y261 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
FOXA2Q9Y261 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA2Q9Y261 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA2Q9Y261 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.52■□□□□ 0.88
FOXA2Q9Y261 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA2Q9Y261 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.51■□□□□ 0.87
FOXA2Q9Y261 MIR6090-201ENST00000622481 60 ntBASIC20.51■□□□□ 0.87
FOXA2Q9Y261 LINC01003-201ENST00000564834 1764 ntBASIC20.51■□□□□ 0.87
FOXA2Q9Y261 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
FOXA2Q9Y261 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA2Q9Y261 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.5■□□□□ 0.87
FOXA2Q9Y261 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms