Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
RNF38Q9H0F5 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
RNF38Q9H0F5 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.82■■□□□ 1.88
RNF38Q9H0F5 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
RNF38Q9H0F5 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
RNF38Q9H0F5 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.81■■□□□ 1.88
RNF38Q9H0F5 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.81■■□□□ 1.88
RNF38Q9H0F5 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
RNF38Q9H0F5 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
RNF38Q9H0F5 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.8■■□□□ 1.88
RNF38Q9H0F5 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
RNF38Q9H0F5 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.79■■□□□ 1.88
RNF38Q9H0F5 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
RNF38Q9H0F5 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
RNF38Q9H0F5 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC26.77■■□□□ 1.88
RNF38Q9H0F5 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
RNF38Q9H0F5 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
RNF38Q9H0F5 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC26.76■■□□□ 1.87
RNF38Q9H0F5 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.75■■□□□ 1.87
RNF38Q9H0F5 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.75■■□□□ 1.87
RNF38Q9H0F5 ABHD17AP3-201ENST00000503096 1137 ntBASIC26.75■■□□□ 1.87
RNF38Q9H0F5 HSD17B1P1-201ENST00000590052 955 ntBASIC26.75■■□□□ 1.87
RNF38Q9H0F5 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
RNF38Q9H0F5 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.73■■□□□ 1.87
RNF38Q9H0F5 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.73■■□□□ 1.87
RNF38Q9H0F5 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RNF38Q9H0F5 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
RNF38Q9H0F5 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RNF38Q9H0F5 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
RNF38Q9H0F5 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
RNF38Q9H0F5 AC110285.7-201ENST00000624417 1536 ntBASIC26.71■■□□□ 1.87
RNF38Q9H0F5 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
RNF38Q9H0F5 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.71■■□□□ 1.87
RNF38Q9H0F5 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
RNF38Q9H0F5 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
RNF38Q9H0F5 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
RNF38Q9H0F5 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
RNF38Q9H0F5 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
RNF38Q9H0F5 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
RNF38Q9H0F5 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC26.7■■□□□ 1.86
RNF38Q9H0F5 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.7■■□□□ 1.86
RNF38Q9H0F5 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RNF38Q9H0F5 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
RNF38Q9H0F5 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.7■■□□□ 1.86
RNF38Q9H0F5 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
RNF38Q9H0F5 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
RNF38Q9H0F5 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RNF38Q9H0F5 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
RNF38Q9H0F5 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
RNF38Q9H0F5 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
RNF38Q9H0F5 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
RNF38Q9H0F5 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.67■■□□□ 1.86
RNF38Q9H0F5 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.67■■□□□ 1.86
RNF38Q9H0F5 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.67■■□□□ 1.86
RNF38Q9H0F5 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.66■■□□□ 1.86
RNF38Q9H0F5 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
RNF38Q9H0F5 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.66■■□□□ 1.86
RNF38Q9H0F5 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RNF38Q9H0F5 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.65■■□□□ 1.86
RNF38Q9H0F5 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.65■■□□□ 1.86
RNF38Q9H0F5 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RNF38Q9H0F5 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
RNF38Q9H0F5 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
RNF38Q9H0F5 AC008813.1-201ENST00000536597 885 ntBASIC26.64■■□□□ 1.86
RNF38Q9H0F5 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.64■■□□□ 1.86
RNF38Q9H0F5 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
RNF38Q9H0F5 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
RNF38Q9H0F5 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
RNF38Q9H0F5 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
RNF38Q9H0F5 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.62■■□□□ 1.85
RNF38Q9H0F5 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.62■■□□□ 1.85
RNF38Q9H0F5 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
RNF38Q9H0F5 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.61■■□□□ 1.85
RNF38Q9H0F5 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
RNF38Q9H0F5 ABCB10P1-201ENST00000614297 2181 ntBASIC26.61■■□□□ 1.85
RNF38Q9H0F5 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
RNF38Q9H0F5 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC26.6■■□□□ 1.85
RNF38Q9H0F5 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC26.6■■□□□ 1.85
RNF38Q9H0F5 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
RNF38Q9H0F5 AP004833.2-201ENST00000532228 1454 ntBASIC26.6■■□□□ 1.85
RNF38Q9H0F5 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
RNF38Q9H0F5 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC26.59■■□□□ 1.85
RNF38Q9H0F5 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RNF38Q9H0F5 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.58■■□□□ 1.85
RNF38Q9H0F5 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
RNF38Q9H0F5 TPT1-202ENST00000379055 948 ntTSL 2 BASIC26.58■■□□□ 1.85
RNF38Q9H0F5 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC26.58■■□□□ 1.85
RNF38Q9H0F5 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms