Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ATXN3-209ENST00000506466 637 ntTSL 34.66□□□□□ -1.664e-12■■■■■ 275.7
SF3B1O75533 ATXN3-241ENST00000556374 1083 ntTSL 1 (best)4.45□□□□□ -1.74e-12■■■■■ 275.7
SF3B1O75533 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.33□□□□□ -1.724e-12■■■■■ 275.7
SF3B1O75533 ATXN3-240ENST00000556339 525 ntTSL 1 (best)4.22□□□□□ -1.734e-12■■■■■ 275.7
SF3B1O75533 ZC3H14-225ENST00000557737 908 ntTSL 54.18□□□□□ -1.744e-12■■■■■ 275.7
SF3B1O75533 ATXN3-227ENST00000554491 1064 ntTSL 1 (best)4.16□□□□□ -1.744e-12■■■■■ 275.7
SF3B1O75533 ATXN3-225ENST00000554214 771 ntTSL 1 (best)3.91□□□□□ -1.784e-12■■■■■ 275.7
SF3B1O75533 ATXN3-217ENST00000553287 726 ntTSL 1 (best)3.9□□□□□ -1.794e-12■■■■■ 275.7
SF3B1O75533 ATXN3-234ENST00000555958 857 ntTSL 1 (best)3.9□□□□□ -1.794e-12■■■■■ 275.7
SF3B1O75533 PPP2CA-206ENST00000523082 510 ntTSL 43.79□□□□□ -1.84e-12■■■■■ 275.7
SF3B1O75533 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.834e-12■■■■■ 275.7
SF3B1O75533 SPCS2-203ENST00000526883 498 ntTSL 23.53□□□□□ -1.844e-12■■■■■ 275.7
SF3B1O75533 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.954e-12■■■■■ 275.7
SF3B1O75533 ATXN3-211ENST00000511362 591 ntTSL 32.69□□□□□ -1.984e-12■■■■■ 275.7
SF3B1O75533 SMIM14-204ENST00000510628 634 ntTSL 32.36□□□□□ -2.034e-12■■■■■ 275.7
SF3B1O75533 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.064e-12■■■■■ 275.7
SF3B1O75533 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.064e-12■■■■■ 275.7
SF3B1O75533 DSCR4-203ENST00000482032 799 ntTSL 32.14□□□□□ -2.074e-12■■■■■ 275.7
SF3B1O75533 ATXN3-208ENST00000504047 426 ntTSL 31.82□□□□□ -2.124e-12■■■■■ 275.7
SF3B1O75533 SEC61A2-210ENST00000457034 314 ntTSL 51□□□□□ -2.254e-12■■■■■ 275.7
SF3B1O75533 ZC3H14-217ENST00000556110 400 ntTSL 30.22□□□□□ -2.374e-12■■■■■ 275.7
SF3B1O75533 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.17□□□□□ -2.444e-12■■■■■ 275.7
SF3B1O75533 SUPT5H-216ENST00000599335 3796 ntTSL 211.37□□□□□ -0.594e-7■■■■■ 275
SF3B1O75533 UNC13D-216ENST00000591616 659 ntTSL 318.38■□□□□ 0.539e-18■■■■■ 274.1
SF3B1O75533 UNC13D-215ENST00000591563 4382 ntTSL 212.68□□□□□ -0.389e-18■■■■■ 274.1
SF3B1O75533 CNOT3-203ENST00000440571 1125 ntTSL 524.45■■□□□ 1.52e-7■■■■■ 273.6
SF3B1O75533 CNOT3-208ENST00000613073 2778 ntTSL 216.73■□□□□ 0.272e-7■■■■■ 273.6
SF3B1O75533 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.64■□□□□ 0.252e-7■■■■■ 273.6
SF3B1O75533 CNOT3-202ENST00000358389 4118 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.522e-7■■■■■ 273.6
SF3B1O75533 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.994e-6■■■■■ 269.1
SF3B1O75533 ARFGAP3-203ENST00000437119 1650 ntTSL 1 (best) BASIC12.23□□□□□ -0.454e-6■■■■■ 269.1
SF3B1O75533 USP36-205ENST00000586531 898 ntTSL 330.42■■■□□ 2.463e-10■■■■■ 267.4
SF3B1O75533 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.83■■□□□ 1.734e-14■■■■■ 267.4
SF3B1O75533 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.82■■□□□ 1.724e-14■■■■■ 267.4
SF3B1O75533 NDEL1-207ENST00000580012 790 ntTSL 324.55■■□□□ 1.524e-14■■■■■ 267.4
SF3B1O75533 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.45■■□□□ 1.54e-14■■■■■ 267.4
SF3B1O75533 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.444e-14■■■■■ 267.4
SF3B1O75533 USP36-220ENST00000591942 564 ntTSL 523.68■■□□□ 1.383e-10■■■■■ 267.4
SF3B1O75533 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.343e-6■■■■■ 267.4
SF3B1O75533 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.25■■□□□ 1.313e-10■■■■■ 267.4
SF3B1O75533 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.81■■□□□ 1.083e-10■■■■■ 267.4
SF3B1O75533 NDEL1-218ENST00000584866 577 ntTSL 521.51■■□□□ 1.034e-14■■■■■ 267.4
SF3B1O75533 NDEL1-209ENST00000580738 552 ntTSL 221.26■□□□□ 0.994e-14■■■■■ 267.4
SF3B1O75533 MAP2K2-204ENST00000595715 861 ntTSL 519.52■□□□□ 0.724e-14■■■■■ 267.4
SF3B1O75533 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.32■□□□□ 0.683e-6■■■■■ 267.4
SF3B1O75533 NDEL1-206ENST00000579880 551 ntTSL 219■□□□□ 0.634e-14■■■■■ 267.4
SF3B1O75533 TCIRG1-207ENST00000528981 755 ntTSL 518.92■□□□□ 0.624e-14■■■■■ 267.4
SF3B1O75533 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.86■□□□□ 0.613e-6■■■■■ 267.4
SF3B1O75533 NPEPL1-209ENST00000533788 899 ntTSL 517.39■□□□□ 0.373e-6■■■■■ 267.4
SF3B1O75533 TCIRG1-208ENST00000529364 868 ntTSL 317.25■□□□□ 0.354e-14■■■■■ 267.4
SF3B1O75533 NPEPL1-207ENST00000529976 4684 ntTSL 1 (best)16.32■□□□□ 0.23e-6■■■■■ 267.4
SF3B1O75533 NPEPL1-206ENST00000527587 4633 ntTSL 515.68■□□□□ 0.13e-6■■■■■ 267.4
SF3B1O75533 NDEL1-203ENST00000402554 1858 ntTSL 5 BASIC13.61□□□□□ -0.234e-14■■■■■ 267.4
SF3B1O75533 NDEL1-208ENST00000580237 577 ntTSL 411.93□□□□□ -0.54e-14■■■■■ 267.4
SF3B1O75533 NDEL1-214ENST00000582665 555 ntTSL 310.81□□□□□ -0.684e-14■■■■■ 267.4
SF3B1O75533 NDEL1-215ENST00000582812 588 ntTSL 410.12□□□□□ -0.794e-14■■■■■ 267.4
SF3B1O75533 NDEL1-216ENST00000583066 567 ntTSL 56.76□□□□□ -1.334e-14■■■■■ 267.4
SF3B1O75533 NDEL1-213ENST00000582490 602 ntTSL 46.55□□□□□ -1.364e-14■■■■■ 267.4
SF3B1O75533 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.463e-9■■■■■ 265.7
SF3B1O75533 NOL6-205ENST00000464829 1829 ntTSL 216.93■□□□□ 0.34e-11■■■■■ 264.2
SF3B1O75533 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.247e-8■■■■■ 264.2
SF3B1O75533 NOL6-201ENST00000297990 4741 ntAPPRIS P1 TSL 1 (best)12.69□□□□□ -0.384e-11■■■■■ 264.2
SF3B1O75533 FAM193A-207ENST00000512465 4663 ntTSL 1 (best)12.08□□□□□ -0.487e-8■■■■■ 264.2
SF3B1O75533 FAM193A-202ENST00000382839 4710 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.557e-8■■■■■ 264.2
SF3B1O75533 FAM193A-208ENST00000513350 3727 ntAPPRIS ALT2 TSL 211.12□□□□□ -0.637e-8■■■■■ 264.2
SF3B1O75533 NOL6-204ENST00000379471 3843 ntTSL 5 BASIC10.76□□□□□ -0.694e-11■■■■■ 264.2
SF3B1O75533 NOL6-202ENST00000353159 3411 ntTSL 1 (best)10.32□□□□□ -0.764e-11■■■■■ 264.2
SF3B1O75533 FAM193A-203ENST00000502458 4083 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.937e-8■■■■■ 264.2
SF3B1O75533 FAM193A-204ENST00000505311 4110 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.937e-8■■■■■ 264.2
SF3B1O75533 FAM193A-210ENST00000545951 3987 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.967e-8■■■■■ 264.2
SF3B1O75533 FAM193A-209ENST00000513898 4202 ntTSL 1 (best)8.92□□□□□ -0.987e-8■■■■■ 264.2
SF3B1O75533 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.944e-6■■■■■ 260.3
SF3B1O75533 MEGF6-205ENST00000485002 4705 ntTSL 515.65■□□□□ 0.14e-6■■■■■ 260.3
SF3B1O75533 MYO3B-209ENST00000602629 5304 ntTSL 28.39□□□□□ -1.074e-6■■■■■ 260.3
SF3B1O75533 MYO3B-205ENST00000438642 4010 ntTSL 58.13□□□□□ -1.114e-6■■■■■ 260.3
SF3B1O75533 MYO3B-201ENST00000317935 5479 ntTSL 27.81□□□□□ -1.164e-6■■■■■ 260.3
SF3B1O75533 MYO3B-208ENST00000484338 3320 ntAPPRIS ALT2 TSL 57.1□□□□□ -1.274e-6■■■■■ 260.3
SF3B1O75533 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.294e-6■■■■■ 260.3
SF3B1O75533 MYO3B-204ENST00000409940 4156 ntTSL 1 (best)6.92□□□□□ -1.34e-6■■■■■ 260.3
SF3B1O75533 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.44e-6■■■■■ 260.3
SF3B1O75533 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC12.49□□□□□ -0.416e-9■■■■■ 259.5
SF3B1O75533 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.07■■□□□ 1.766e-11■■■■■ 258.5
SF3B1O75533 GUCD1-205ENST00000407973 773 ntTSL 325.63■■□□□ 1.696e-11■■■■■ 258.5
SF3B1O75533 GUCD1-201ENST00000398245 1593 ntTSL 525.57■■□□□ 1.686e-11■■■■■ 258.5
SF3B1O75533 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.35■■□□□ 1.656e-11■■■■■ 258.5
SF3B1O75533 GUCD1-208ENST00000468170 619 ntTSL 221.27■□□□□ 0.996e-11■■■■■ 258.5
SF3B1O75533 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.89■□□□□ 0.466e-11■■■■■ 258.5
SF3B1O75533 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.216e-11■■■■■ 258.5
SF3B1O75533 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.116e-11■■■■■ 258.5
SF3B1O75533 MSN-205ENST00000609205 1761 ntTSL 1 (best)14.68□□□□□ -0.067e-22■■■■■ 258.5
SF3B1O75533 MSN-202ENST00000429601 487 ntTSL 514.66□□□□□ -0.067e-22■■■■■ 258.5
SF3B1O75533 BSCL2-212ENST00000449636 545 ntTSL 313.86□□□□□ -0.191e-14■■■■■ 258.5
SF3B1O75533 BSCL2-213ENST00000463679 881 ntTSL 213.64□□□□□ -0.231e-14■■■■■ 258.5
SF3B1O75533 PLOD1-205ENST00000465920 871 ntTSL 513.17□□□□□ -0.37e-22■■■■■ 258.5
SF3B1O75533 GUCD1-213ENST00000621833 3584 ntTSL 1 (best) BASIC11.61□□□□□ -0.556e-11■■■■■ 258.5
SF3B1O75533 BSCL2-216ENST00000470529 512 ntTSL 29.16□□□□□ -0.941e-14■■■■■ 258.5
SF3B1O75533 HSD17B12-207ENST00000532178 403 ntTSL 54.49□□□□□ -1.692e-6■■■■■ 258.5
SF3B1O75533 HSD17B12-204ENST00000527213 571 ntTSL 44.49□□□□□ -1.692e-6■■■■■ 258.5
SF3B1O75533 BSCL2-204ENST00000403098 326 ntTSL 54.46□□□□□ -1.691e-14■■■■■ 258.5
SF3B1O75533 PPP2R5A-203ENST00000498123 399 ntTSL 22.4□□□□□ -2.031e-14■■■■■ 258.5
Retrieved 100 of 46,956 protein–RNA pairs in 3335.1 ms