RNA–Protein interactions for RNA: ENST00000580237.5

NDEL1-208, Transcript of nudE neurodevelopment protein 1 like 1, humanhuman

TSL 4

Gene NDEL1, Length 577 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDEL1-208ENST00000580237 NISCHQ9Y2I1 1504 aa26.6■■□□□ 1.85
NDEL1-208ENST00000580237 CCDC180Q9P1Z9 1646 aa23.82■■□□□ 1.4
NDEL1-208ENST00000580237 ABCC9O60706 1549 aa23.33■■□□□ 1.33
NDEL1-208ENST00000580237 RB1CC1Q8TDY2 1594 aa22.44■■□□□ 1.18
NDEL1-208ENST00000580237 NACADO15069 1562 aa22.34■■□□□ 1.17
NDEL1-208ENST00000580237 DCAF8L2P0C7V8 631 aa22.27■■□□□ 1.16
NDEL1-208ENST00000580237 ZCCHC6Q5VYS8 1495 aaKnown RBP22.16■■□□□ 1.14
NDEL1-208ENST00000580237 MYO15BQ96JP2 1530 aa22.12■■□□□ 1.13
NDEL1-208ENST00000580237 DCAF1Q9Y4B6 1507 aa22■■□□□ 1.11
NDEL1-208ENST00000580237 UNC13AQ9UPW8 1703 aa21.99■■□□□ 1.11
NDEL1-208ENST00000580237 SCRIBQ14160 1630 aa21.73■■□□□ 1.07
NDEL1-208ENST00000580237 PABPN1Q86U42 306 aaKnown RBP eCLIP21.71■■□□□ 1.07
NDEL1-208ENST00000580237 BICRAQ9NZM4 1560 aa21.69■■□□□ 1.06
NDEL1-208ENST00000580237 SHROOM4Q9ULL8 1493 aa21.49■■□□□ 1.03
NDEL1-208ENST00000580237 DNAJC5BQ9UF47 199 aa21.34■■□□□ 1.01
NDEL1-208ENST00000580237 EIF4G1Q04637 1599 aaKnown RBP21.17■□□□□ 0.98
NDEL1-208ENST00000580237 CC2D2AQ9P2K1 1620 aa21.12■□□□□ 0.97
NDEL1-208ENST00000580237 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
NDEL1-208ENST00000580237 SMARCA4P51532 1647 aa20.73■□□□□ 0.91
NDEL1-208ENST00000580237 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
NDEL1-208ENST00000580237 SMARCA2P51531 1590 aa20.61■□□□□ 0.89
NDEL1-208ENST00000580237 ATAD2BQ9ULI0 1458 aa20.56■□□□□ 0.88
NDEL1-208ENST00000580237 NCAPD3P42695 1498 aa20.54■□□□□ 0.88
NDEL1-208ENST00000580237 HMGXB3Q12766 1538 aa20.53■□□□□ 0.88
NDEL1-208ENST00000580237 MROH2BQ7Z745 1585 aa20.5■□□□□ 0.87
NDEL1-208ENST00000580237 PEG3Q9GZU2 1588 aa20.48■□□□□ 0.87
NDEL1-208ENST00000580237 BAZ1BQ9UIG0 1483 aaKnown RBP20.46■□□□□ 0.87
NDEL1-208ENST00000580237 WIZO95785 1651 aa20.34■□□□□ 0.85
NDEL1-208ENST00000580237 RSF1Q96T23 1441 aaPredicted RBP20.19■□□□□ 0.82
NDEL1-208ENST00000580237 ERCC6Q03468 1493 aa20.18■□□□□ 0.82
NDEL1-208ENST00000580237 NESP48681 1621 aa20.13■□□□□ 0.81
NDEL1-208ENST00000580237 LAMC3Q9Y6N6 1575 aa20.12■□□□□ 0.81
NDEL1-208ENST00000580237 TOP2AP11388 1531 aaKnown RBP20.12■□□□□ 0.81
NDEL1-208ENST00000580237 KIF21AQ7Z4S6 1674 aa20■□□□□ 0.79
NDEL1-208ENST00000580237 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.78
NDEL1-208ENST00000580237 CUX2O14529 1486 aa19.94■□□□□ 0.78
NDEL1-208ENST00000580237 PDS5BQ9NTI5 1447 aa19.93■□□□□ 0.78
NDEL1-208ENST00000580237 THOC2Q8NI27 1593 aaKnown RBP19.91■□□□□ 0.78
NDEL1-208ENST00000580237 PRDM2Q13029 1718 aa19.87■□□□□ 0.77
NDEL1-208ENST00000580237 CFTRP13569 1480 aa19.81■□□□□ 0.76
NDEL1-208ENST00000580237 CEP164Q9UPV0 1460 aa19.8■□□□□ 0.76
NDEL1-208ENST00000580237 CCDC88BA6NC98 1476 aa19.79■□□□□ 0.76
NDEL1-208ENST00000580237 FANCD2Q9BXW9 1451 aa19.78■□□□□ 0.76
NDEL1-208ENST00000580237 MRC2Q9UBG0 1479 aa19.78■□□□□ 0.76
NDEL1-208ENST00000580237 WDR62O43379 1518 aa19.71■□□□□ 0.75
NDEL1-208ENST00000580237 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.73
NDEL1-208ENST00000580237 URB2Q14146 1524 aaKnown RBP19.57■□□□□ 0.72
NDEL1-208ENST00000580237 DNMBPQ6XZF7 1577 aa19.45■□□□□ 0.7
NDEL1-208ENST00000580237 TOPBP1Q92547 1522 aa19.45■□□□□ 0.7
NDEL1-208ENST00000580237 ABCC8Q09428 1581 aa19.44■□□□□ 0.7
NDEL1-208ENST00000580237 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
NDEL1-208ENST00000580237 DNAJC5Q9H3Z4 198 aa19.34■□□□□ 0.69
NDEL1-208ENST00000580237 EIF4G3O43432 1585 aaKnown RBP19.27■□□□□ 0.68
NDEL1-208ENST00000580237 POLA1P09884 1462 aaPredicted RBP19.27■□□□□ 0.67
NDEL1-208ENST00000580237 CUX1P39880 1505 aa19.25■□□□□ 0.67
NDEL1-208ENST00000580237 ZNF608Q9ULD9 1512 aaPredicted RBP19.25■□□□□ 0.67
NDEL1-208ENST00000580237 TARBP1Q13395 1621 aaKnown RBP19.25■□□□□ 0.67
NDEL1-208ENST00000580237 FGD5Q6ZNL6 1462 aa19.23■□□□□ 0.67
NDEL1-208ENST00000580237 RAD54L2Q9Y4B4 1467 aa19.17■□□□□ 0.66
NDEL1-208ENST00000580237 SOGA1O94964 1423 aa19.16■□□□□ 0.66
NDEL1-208ENST00000580237 WDR97A6NE52 1622 aa19.14■□□□□ 0.65
NDEL1-208ENST00000580237 BIVM-ERCC5R4GMW8 1640 aa19.12■□□□□ 0.65
NDEL1-208ENST00000580237 AQRO60306 1485 aaKnown RBP eCLIP19.11■□□□□ 0.656e-9■■■■□ 20
NDEL1-208ENST00000580237 WRNQ14191 1432 aaPredicted RBP eCLIP19.1■□□□□ 0.65
NDEL1-208ENST00000580237 TOP2BQ02880 1626 aa19.1■□□□□ 0.65
NDEL1-208ENST00000580237 CHD1O14646 1710 aa19.09■□□□□ 0.65
NDEL1-208ENST00000580237 SYNJ1O43426 1573 aa19.09■□□□□ 0.65
NDEL1-208ENST00000580237 PBRM1Q86U86 1689 aa19.07■□□□□ 0.64
NDEL1-208ENST00000580237 TDRD9Q8NDG6 1382 aaKnown RBP19.06■□□□□ 0.64
NDEL1-208ENST00000580237 OSCARQ8IYS5 282 aa19.03■□□□□ 0.64
NDEL1-208ENST00000580237 ABCA10Q8WWZ4 1543 aa19.01■□□□□ 0.63
NDEL1-208ENST00000580237 ABCA5Q8WWZ7 1642 aa19■□□□□ 0.63
NDEL1-208ENST00000580237 SNAPC4Q5SXM2 1469 aa19■□□□□ 0.63
NDEL1-208ENST00000580237 GRIN2BQ13224 1484 aa18.98■□□□□ 0.63
NDEL1-208ENST00000580237 GAPVD1Q14C86 1478 aa18.97■□□□□ 0.63
NDEL1-208ENST00000580237 MAGI1Q96QZ7 1491 aaPredicted RBP18.97■□□□□ 0.63
NDEL1-208ENST00000580237 FBLN2P98095 1184 aa18.95■□□□□ 0.62
NDEL1-208ENST00000580237 SYNJ2O15056 1496 aa18.88■□□□□ 0.61
NDEL1-208ENST00000580237 CHMP7Q8WUX9 453 aaPredicted RBP18.85■□□□□ 0.61
NDEL1-208ENST00000580237 RIMBP3CA6NJZ7 1639 aa18.85■□□□□ 0.61
NDEL1-208ENST00000580237 RIMBP3BA6NNM3 1639 aa18.85■□□□□ 0.61
NDEL1-208ENST00000580237 RIMBP3Q9UFD9 1639 aa18.85■□□□□ 0.61
NDEL1-208ENST00000580237 ADAMTS12P58397 1594 aa18.85■□□□□ 0.61
NDEL1-208ENST00000580237 ARHGEF11O15085 1522 aa18.8■□□□□ 0.6
NDEL1-208ENST00000580237 ERICH3Q5RHP9 1530 aa18.8■□□□□ 0.6
NDEL1-208ENST00000580237 CLASP1Q7Z460 1538 aa18.78■□□□□ 0.6
NDEL1-208ENST00000580237 TRIM41Q8WV44 630 aa18.77■□□□□ 0.6
NDEL1-208ENST00000580237 GRIN2AQ12879 1464 aa18.76■□□□□ 0.59
NDEL1-208ENST00000580237 FHAD1B1AJZ9 1412 aa18.74■□□□□ 0.59
NDEL1-208ENST00000580237 KIF27Q86VH2 1401 aa18.72■□□□□ 0.59
NDEL1-208ENST00000580237 CUL7Q14999 1698 aa18.69■□□□□ 0.58
NDEL1-208ENST00000580237 CEP170Q5SW79 1584 aa18.68■□□□□ 0.58
NDEL1-208ENST00000580237 NUP160Q12769 1436 aa18.63■□□□□ 0.57
NDEL1-208ENST00000580237 ARAP1Q96P48 1450 aa18.62■□□□□ 0.57
NDEL1-208ENST00000580237 RUSC2Q8N2Y8 1516 aa18.58■□□□□ 0.56
NDEL1-208ENST00000580237 SHROOM2Q13796 1616 aa18.56■□□□□ 0.56
NDEL1-208ENST00000580237 CYB5RLQ6IPT4 315 aa18.56■□□□□ 0.56
NDEL1-208ENST00000580237 IGF1RP08069 1367 aa18.55■□□□□ 0.56
NDEL1-208ENST00000580237 ERCC6L2Q5T890 1561 aa18.5■□□□□ 0.55
NDEL1-208ENST00000580237 CARMIL1Q5VZK9 1371 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms