RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 AEBP2Q6ZN18 517 aaPredicted RBP21.37■■□□□ 1.01
ATXN3-240ENST00000556339 CHIC1Q5VXU3 224 aa20.39■□□□□ 0.85
ATXN3-240ENST00000556339 SENP3Q9H4L4 574 aaPredicted RBP18.32■□□□□ 0.52
ATXN3-240ENST00000556339 PHF23Q9BUL5 403 aaPredicted RBP18.06■□□□□ 0.48
ATXN3-240ENST00000556339 FOXD1Q16676 465 aa17.01■□□□□ 0.31
ATXN3-240ENST00000556339 PLPPR3Q6T4P5 718 aa16.38■□□□□ 0.21
ATXN3-240ENST00000556339 PIAS4Q8N2W9 510 aaPredicted RBP16■□□□□ 0.15
ATXN3-240ENST00000556339 MSH5O43196 834 aa15.97■□□□□ 0.15
ATXN3-240ENST00000556339 ADRA2BP18089 450 aa15.92■□□□□ 0.14
ATXN3-240ENST00000556339 PPP6R1Q9UPN7 881 aa15.91■□□□□ 0.14
ATXN3-240ENST00000556339 POTEDQ86YR6 584 aa15.44■□□□□ 0.06
ATXN3-240ENST00000556339 SCAF1Q9H7N4 1312 aaKnown RBP14.66□□□□□ -0.06
ATXN3-240ENST00000556339 MAPK8IP2Q13387 824 aaPredicted RBP14.59□□□□□ -0.07
ATXN3-240ENST00000556339 DMRT2Q9Y5R5 561 aa14.49□□□□□ -0.09
ATXN3-240ENST00000556339 PPP4R3CPQ6ZMV5 832 aa14.34□□□□□ -0.11
ATXN3-240ENST00000556339 DCAF8L1A6NGE4 600 aa14.07□□□□□ -0.16
ATXN3-240ENST00000556339 CNKSR2Q8WXI2 1034 aa14.07□□□□□ -0.16
ATXN3-240ENST00000556339 HOXD11P31277 338 aaPredicted RBP13.95□□□□□ -0.18
ATXN3-240ENST00000556339 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
ATXN3-240ENST00000556339 NCBP3Q53F19 620 aaKnown RBP13.88□□□□□ -0.19
ATXN3-240ENST00000556339 CACNB1Q02641 598 aaPredicted RBP13.71□□□□□ -0.21
ATXN3-240ENST00000556339 NPM3O75607 178 aaKnown RBP13.59□□□□□ -0.23
ATXN3-240ENST00000556339 RNF39Q9H2S5 420 aa13.57□□□□□ -0.24
ATXN3-240ENST00000556339 DNAJC5BQ9UF47 199 aa13.44□□□□□ -0.26
ATXN3-240ENST00000556339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.43□□□□□ -0.26
ATXN3-240ENST00000556339 C1QBPQ07021 282 aaKnown RBP13.42□□□□□ -0.26
ATXN3-240ENST00000556339 KCNA4P22459 653 aa13.38□□□□□ -0.27
ATXN3-240ENST00000556339 U3KPZ7 1027 aaPredicted RBP13.05□□□□□ -0.32
ATXN3-240ENST00000556339 CAPN15O75808 1086 aa12.94□□□□□ -0.34
ATXN3-240ENST00000556339 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
ATXN3-240ENST00000556339 SPINK5Q9NQ38 1064 aaPredicted RBP12.86□□□□□ -0.35
ATXN3-240ENST00000556339 APLP2Q06481 763 aa12.83□□□□□ -0.36
ATXN3-240ENST00000556339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.81□□□□□ -0.36
ATXN3-240ENST00000556339 HNRNPUL2Q1KMD3 747 aaKnown RBP12.81□□□□□ -0.36
ATXN3-240ENST00000556339 TRHP20396 242 aaPredicted RBP12.74□□□□□ -0.37
ATXN3-240ENST00000556339 DSG3P32926 999 aa12.74□□□□□ -0.37
ATXN3-240ENST00000556339 SAMD1Q6SPF0 538 aaPredicted RBP12.71□□□□□ -0.37
ATXN3-240ENST00000556339 SLC4A1APQ9BWU0 796 aaKnown RBP12.71□□□□□ -0.37
ATXN3-240ENST00000556339 ZNF219Q9P2Y4 722 aaPredicted RBP12.69□□□□□ -0.38
ATXN3-240ENST00000556339 ABCB7O75027 752 aa12.61□□□□□ -0.39
ATXN3-240ENST00000556339 MYCNP04198 464 aaPredicted RBP12.61□□□□□ -0.39
ATXN3-240ENST00000556339 FOXD4L1Q9NU39 408 aa12.52□□□□□ -0.41
ATXN3-240ENST00000556339 POLA2Q14181 598 aa12.36□□□□□ -0.43
ATXN3-240ENST00000556339 ZBTB22O15209 634 aa12.25□□□□□ -0.45
ATXN3-240ENST00000556339 RBM42Q9BTD8 480 aaKnown RBP12.24□□□□□ -0.45
ATXN3-240ENST00000556339 ATF5Q9Y2D1 282 aaPredicted RBP12.24□□□□□ -0.45
ATXN3-240ENST00000556339 POTEHQ6S545 545 aa12.15□□□□□ -0.46
ATXN3-240ENST00000556339 ZBTB12Q9Y330 459 aaPredicted RBP12.15□□□□□ -0.46
ATXN3-240ENST00000556339 ATXN8OSP0DMR3 200 aa12.08□□□□□ -0.48
ATXN3-240ENST00000556339 OSCARQ8IYS5 282 aa11.97□□□□□ -0.49
ATXN3-240ENST00000556339 AKT1S1Q96B36 256 aa11.92□□□□□ -0.5
ATXN3-240ENST00000556339 CHRDL2Q6WN34 429 aa11.91□□□□□ -0.5
ATXN3-240ENST00000556339 FBLN2P98095 1184 aa11.9□□□□□ -0.5
ATXN3-240ENST00000556339 REM2Q8IYK8 340 aaPredicted RBP11.8□□□□□ -0.52
ATXN3-240ENST00000556339 EHMT2Q96KQ7 1210 aa11.77□□□□□ -0.53
ATXN3-240ENST00000556339 CSRNP3Q8WYN3 585 aa11.76□□□□□ -0.53
ATXN3-240ENST00000556339 SPDYE2BA6NHP3 402 aa11.74□□□□□ -0.53
ATXN3-240ENST00000556339 SPDYE6P0CI01 402 aa11.74□□□□□ -0.53
ATXN3-240ENST00000556339 SPDYE2Q495Y8 402 aa11.74□□□□□ -0.53
ATXN3-240ENST00000556339 PITPNM1O00562 1244 aa11.67□□□□□ -0.54
ATXN3-240ENST00000556339 MKRN4PQ13434 485 aaPredicted RBP11.67□□□□□ -0.54
ATXN3-240ENST00000556339 ZNF692Q9BU19 519 aaPredicted RBP11.65□□□□□ -0.54
ATXN3-240ENST00000556339 PIP4P2Q8N4L2 257 aa11.61□□□□□ -0.55
ATXN3-240ENST00000556339 CLEC11AQ9Y240 323 aa11.58□□□□□ -0.56
ATXN3-240ENST00000556339 SPDYE1Q8NFV5 336 aaPredicted RBP11.55□□□□□ -0.56
ATXN3-240ENST00000556339 SSUH2Q9Y2M2 353 aa11.53□□□□□ -0.56
ATXN3-240ENST00000556339 FXR2P51116 673 aaKnown RBP eCLIP11.52□□□□□ -0.57
ATXN3-240ENST00000556339 HAX1O00165 279 aa11.47□□□□□ -0.57
ATXN3-240ENST00000556339 PABPN1Q86U42 306 aaKnown RBP eCLIP11.46□□□□□ -0.57
ATXN3-240ENST00000556339 SP7Q8TDD2 431 aaPredicted RBP11.42□□□□□ -0.58
ATXN3-240ENST00000556339 PRKAR2AP13861 404 aaKnown RBP11.41□□□□□ -0.58
ATXN3-240ENST00000556339 PRR29P0C7W0 189 aa11.37□□□□□ -0.59
ATXN3-240ENST00000556339 CHADLQ6NUI6 762 aa11.29□□□□□ -0.6
ATXN3-240ENST00000556339 SPDYE4A6NLX3 237 aa11.25□□□□□ -0.61
ATXN3-240ENST00000556339 EVX2Q03828 476 aa11.2□□□□□ -0.62
ATXN3-240ENST00000556339 STAG3Q9UJ98 1225 aa11.18□□□□□ -0.62
ATXN3-240ENST00000556339 C19orf67A6NJJ6 358 aa11.15□□□□□ -0.62
ATXN3-240ENST00000556339 FARP1Q9Y4F1 1045 aaPredicted RBP11.11□□□□□ -0.63
ATXN3-240ENST00000556339 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
ATXN3-240ENST00000556339 GABBR2O75899 941 aa11.01□□□□□ -0.65
ATXN3-240ENST00000556339 CREBZFQ9NS37 354 aa11□□□□□ -0.65
ATXN3-240ENST00000556339 ZRANB1Q9UGI0 708 aa10.94□□□□□ -0.66
ATXN3-240ENST00000556339 PAK3O75914 559 aaPredicted RBP10.93□□□□□ -0.66
ATXN3-240ENST00000556339 NPM1P06748 294 aaKnown RBP eCLIP10.91□□□□□ -0.66
ATXN3-240ENST00000556339 CLCN6P51797 869 aa10.87□□□□□ -0.67
ATXN3-240ENST00000556339 PROM2Q8N271 834 aa10.85□□□□□ -0.67
ATXN3-240ENST00000556339 PLEKHG5O94827 1062 aa10.84□□□□□ -0.67
ATXN3-240ENST00000556339 ZNF579Q8NAF0 562 aaKnown RBP10.84□□□□□ -0.67
ATXN3-240ENST00000556339 DCBLD2Q96PD2 775 aa10.82□□□□□ -0.68
ATXN3-240ENST00000556339 MNX1P50219 401 aaPredicted RBP10.77□□□□□ -0.69
ATXN3-240ENST00000556339 FKBP8Q14318 412 aa10.77□□□□□ -0.69
ATXN3-240ENST00000556339 MIER1Q8N108 512 aa10.77□□□□□ -0.69
ATXN3-240ENST00000556339 PHF12Q96QT6 1004 aa10.74□□□□□ -0.69
ATXN3-240ENST00000556339 GALR2O43603 387 aaPredicted RBP10.72□□□□□ -0.69
ATXN3-240ENST00000556339 LHX8Q68G74 356 aa10.72□□□□□ -0.69
ATXN3-240ENST00000556339 PLCD3Q8N3E9 789 aa10.72□□□□□ -0.69
ATXN3-240ENST00000556339 TSPYL2Q9H2G4 693 aaPredicted RBP10.72□□□□□ -0.69
ATXN3-240ENST00000556339 POTEIP0CG38 1075 aa10.71□□□□□ -0.69
ATXN3-240ENST00000556339 ZBTB47Q9UFB7 747 aaPredicted RBP10.63□□□□□ -0.71
ATXN3-240ENST00000556339 MS4A3Q96HJ5 214 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms