RNA–Protein interactions for RNA: ENST00000556374.5

ATXN3-241, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,083 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-241ENST00000556374 AEBP2Q6ZN18 517 aaPredicted RBP21.2■□□□□ 0.98
ATXN3-241ENST00000556374 CHIC1Q5VXU3 224 aa20.34■□□□□ 0.85
ATXN3-241ENST00000556374 SENP3Q9H4L4 574 aaPredicted RBP18.16■□□□□ 0.5
ATXN3-241ENST00000556374 PHF23Q9BUL5 403 aaPredicted RBP17.87■□□□□ 0.45
ATXN3-241ENST00000556374 FOXD1Q16676 465 aa16.94■□□□□ 0.3
ATXN3-241ENST00000556374 PLPPR3Q6T4P5 718 aa16.37■□□□□ 0.21
ATXN3-241ENST00000556374 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
ATXN3-241ENST00000556374 MSH5O43196 834 aa15.94■□□□□ 0.14
ATXN3-241ENST00000556374 PIAS4Q8N2W9 510 aaPredicted RBP15.81■□□□□ 0.12
ATXN3-241ENST00000556374 PPP6R1Q9UPN7 881 aa15.75■□□□□ 0.11
ATXN3-241ENST00000556374 ADRA2BP18089 450 aa15.69■□□□□ 0.1
ATXN3-241ENST00000556374 SCAF1Q9H7N4 1312 aaKnown RBP14.61□□□□□ -0.07
ATXN3-241ENST00000556374 MAPK8IP2Q13387 824 aaPredicted RBP14.42□□□□□ -0.1
ATXN3-241ENST00000556374 DMRT2Q9Y5R5 561 aa14.4□□□□□ -0.1
ATXN3-241ENST00000556374 PPP4R3CPQ6ZMV5 832 aa14.29□□□□□ -0.12
ATXN3-241ENST00000556374 CNKSR2Q8WXI2 1034 aa14.08□□□□□ -0.16
ATXN3-241ENST00000556374 HOXD11P31277 338 aaPredicted RBP13.97□□□□□ -0.17
ATXN3-241ENST00000556374 CACNB1Q02641 598 aaPredicted RBP13.94□□□□□ -0.18
ATXN3-241ENST00000556374 RNF216Q9NWF9 866 aaPredicted RBP13.92□□□□□ -0.18
ATXN3-241ENST00000556374 DCAF8L1A6NGE4 600 aa13.91□□□□□ -0.18
ATXN3-241ENST00000556374 NCBP3Q53F19 620 aaKnown RBP13.91□□□□□ -0.18
ATXN3-241ENST00000556374 DNAJC5BQ9UF47 199 aa13.66□□□□□ -0.22
ATXN3-241ENST00000556374 NPM3O75607 178 aaKnown RBP13.57□□□□□ -0.24
ATXN3-241ENST00000556374 RNF39Q9H2S5 420 aa13.56□□□□□ -0.24
ATXN3-241ENST00000556374 KCNA4P22459 653 aa13.39□□□□□ -0.27
ATXN3-241ENST00000556374 C1QBPQ07021 282 aaKnown RBP13.34□□□□□ -0.27
ATXN3-241ENST00000556374 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.21□□□□□ -0.29
ATXN3-241ENST00000556374 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
ATXN3-241ENST00000556374 SLC4A2P04920 1241 aa12.9□□□□□ -0.34
ATXN3-241ENST00000556374 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.83□□□□□ -0.36
ATXN3-241ENST00000556374 APLP2Q06481 763 aa12.83□□□□□ -0.36
ATXN3-241ENST00000556374 HNRNPUL2Q1KMD3 747 aaKnown RBP12.83□□□□□ -0.36
ATXN3-241ENST00000556374 CAPN15O75808 1086 aa12.73□□□□□ -0.37
ATXN3-241ENST00000556374 SLC4A1APQ9BWU0 796 aaKnown RBP12.73□□□□□ -0.37
ATXN3-241ENST00000556374 SAMD1Q6SPF0 538 aaPredicted RBP12.7□□□□□ -0.38
ATXN3-241ENST00000556374 SPINK5Q9NQ38 1064 aaPredicted RBP12.69□□□□□ -0.38
ATXN3-241ENST00000556374 MYCNP04198 464 aaPredicted RBP12.64□□□□□ -0.39
ATXN3-241ENST00000556374 DSG3P32926 999 aa12.62□□□□□ -0.39
ATXN3-241ENST00000556374 ZNF219Q9P2Y4 722 aaPredicted RBP12.62□□□□□ -0.39
ATXN3-241ENST00000556374 POTEHQ6S545 545 aa12.56□□□□□ -0.4
ATXN3-241ENST00000556374 FOXD4L1Q9NU39 408 aa12.56□□□□□ -0.4
ATXN3-241ENST00000556374 TRHP20396 242 aaPredicted RBP12.47□□□□□ -0.41
ATXN3-241ENST00000556374 ABCB7O75027 752 aa12.43□□□□□ -0.42
ATXN3-241ENST00000556374 ATXN8OSP0DMR3 200 aa12.3□□□□□ -0.44
ATXN3-241ENST00000556374 ZBTB22O15209 634 aa12.26□□□□□ -0.45
ATXN3-241ENST00000556374 POLA2Q14181 598 aa12.21□□□□□ -0.45
ATXN3-241ENST00000556374 ZBTB12Q9Y330 459 aaPredicted RBP12.16□□□□□ -0.46
ATXN3-241ENST00000556374 RBM42Q9BTD8 480 aaKnown RBP12.14□□□□□ -0.47
ATXN3-241ENST00000556374 ATF5Q9Y2D1 282 aaPredicted RBP12.14□□□□□ -0.47
ATXN3-241ENST00000556374 CHRDL2Q6WN34 429 aa11.93□□□□□ -0.5
ATXN3-241ENST00000556374 CSRNP3Q8WYN3 585 aa11.91□□□□□ -0.5
ATXN3-241ENST00000556374 AKT1S1Q96B36 256 aa11.87□□□□□ -0.51
ATXN3-241ENST00000556374 FBLN2P98095 1184 aa11.84□□□□□ -0.51
ATXN3-241ENST00000556374 OSCARQ8IYS5 282 aa11.76□□□□□ -0.53
ATXN3-241ENST00000556374 SPDYE2BA6NHP3 402 aa11.75□□□□□ -0.53
ATXN3-241ENST00000556374 SPDYE6P0CI01 402 aa11.75□□□□□ -0.53
ATXN3-241ENST00000556374 SPDYE2Q495Y8 402 aa11.75□□□□□ -0.53
ATXN3-241ENST00000556374 EHMT2Q96KQ7 1210 aa11.71□□□□□ -0.53
ATXN3-241ENST00000556374 REM2Q8IYK8 340 aaPredicted RBP11.66□□□□□ -0.54
ATXN3-241ENST00000556374 MKRN4PQ13434 485 aaPredicted RBP11.65□□□□□ -0.54
ATXN3-241ENST00000556374 SP7Q8TDD2 431 aaPredicted RBP11.63□□□□□ -0.55
ATXN3-241ENST00000556374 PIP4P2Q8N4L2 257 aa11.59□□□□□ -0.55
ATXN3-241ENST00000556374 SSUH2Q9Y2M2 353 aa11.56□□□□□ -0.56
ATXN3-241ENST00000556374 ZNF692Q9BU19 519 aaPredicted RBP11.53□□□□□ -0.56
ATXN3-241ENST00000556374 HAX1O00165 279 aa11.52□□□□□ -0.57
ATXN3-241ENST00000556374 PITPNM1O00562 1244 aa11.52□□□□□ -0.57
ATXN3-241ENST00000556374 SPDYE1Q8NFV5 336 aaPredicted RBP11.48□□□□□ -0.57
ATXN3-241ENST00000556374 FXR2P51116 673 aaKnown RBP eCLIP11.46□□□□□ -0.57
ATXN3-241ENST00000556374 PABPN1Q86U42 306 aaKnown RBP eCLIP11.34□□□□□ -0.59
ATXN3-241ENST00000556374 EVX2Q03828 476 aa11.31□□□□□ -0.6
ATXN3-241ENST00000556374 CLEC11AQ9Y240 323 aa11.3□□□□□ -0.6
ATXN3-241ENST00000556374 PRKAR2AP13861 404 aaKnown RBP11.25□□□□□ -0.61
ATXN3-241ENST00000556374 STAG3Q9UJ98 1225 aa11.24□□□□□ -0.61
ATXN3-241ENST00000556374 SPDYE4A6NLX3 237 aa11.23□□□□□ -0.61
ATXN3-241ENST00000556374 PRR29P0C7W0 189 aa11.23□□□□□ -0.61
ATXN3-241ENST00000556374 CHADLQ6NUI6 762 aa11.1□□□□□ -0.63
ATXN3-241ENST00000556374 PROM2Q8N271 834 aa11.09□□□□□ -0.63
ATXN3-241ENST00000556374 C19orf67A6NJJ6 358 aa11.08□□□□□ -0.64
ATXN3-241ENST00000556374 GABBR2O75899 941 aa11.03□□□□□ -0.64
ATXN3-241ENST00000556374 FARP1Q9Y4F1 1045 aaPredicted RBP11□□□□□ -0.65
ATXN3-241ENST00000556374 CLCN6P51797 869 aa10.99□□□□□ -0.65
ATXN3-241ENST00000556374 CREBZFQ9NS37 354 aa10.95□□□□□ -0.66
ATXN3-241ENST00000556374 LHX8Q68G74 356 aa10.93□□□□□ -0.66
ATXN3-241ENST00000556374 NPM1P06748 294 aaKnown RBP eCLIP10.88□□□□□ -0.67
ATXN3-241ENST00000556374 CD44P16070 742 aaKnown RBP10.87□□□□□ -0.67
ATXN3-241ENST00000556374 MNX1P50219 401 aaPredicted RBP10.81□□□□□ -0.68
ATXN3-241ENST00000556374 PLEKHG5O94827 1062 aa10.8□□□□□ -0.68
ATXN3-241ENST00000556374 ZNF579Q8NAF0 562 aaKnown RBP10.79□□□□□ -0.68
ATXN3-241ENST00000556374 PAK3O75914 559 aaPredicted RBP10.78□□□□□ -0.68
ATXN3-241ENST00000556374 POTEIP0CG38 1075 aa10.77□□□□□ -0.69
ATXN3-241ENST00000556374 FKBP8Q14318 412 aa10.76□□□□□ -0.69
ATXN3-241ENST00000556374 DCBLD2Q96PD2 775 aa10.72□□□□□ -0.69
ATXN3-241ENST00000556374 ZRANB1Q9UGI0 708 aa10.72□□□□□ -0.69
ATXN3-241ENST00000556374 ZBTB47Q9UFB7 747 aaPredicted RBP10.71□□□□□ -0.69
ATXN3-241ENST00000556374 FBXO3Q9UK99 471 aa10.7□□□□□ -0.7
ATXN3-241ENST00000556374 MIER1Q8N108 512 aa10.68□□□□□ -0.7
ATXN3-241ENST00000556374 PLCD3Q8N3E9 789 aa10.62□□□□□ -0.71
ATXN3-241ENST00000556374 GALR2O43603 387 aaPredicted RBP10.58□□□□□ -0.72
ATXN3-241ENST00000556374 PLSCR2Q9NRY7 297 aa10.58□□□□□ -0.72
ATXN3-241ENST00000556374 CCDC61Q9Y6R9 512 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms