RNA–Protein interactions for RNA: ENST00000554491.5

ATXN3-227, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,064 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-227ENST00000554491 AEBP2Q6ZN18 517 aaPredicted RBP23.78■■□□□ 1.4
ATXN3-227ENST00000554491 CHIC1Q5VXU3 224 aa22.59■■□□□ 1.21
ATXN3-227ENST00000554491 SENP3Q9H4L4 574 aaPredicted RBP20.18■□□□□ 0.82
ATXN3-227ENST00000554491 PHF23Q9BUL5 403 aaPredicted RBP19.98■□□□□ 0.79
ATXN3-227ENST00000554491 FOXD1Q16676 465 aa18.86■□□□□ 0.61
ATXN3-227ENST00000554491 PLPPR3Q6T4P5 718 aa18.06■□□□□ 0.48
ATXN3-227ENST00000554491 PPP6R1Q9UPN7 881 aa17.74■□□□□ 0.43
ATXN3-227ENST00000554491 ADRA2BP18089 450 aa17.67■□□□□ 0.42
ATXN3-227ENST00000554491 PIAS4Q8N2W9 510 aaPredicted RBP17.62■□□□□ 0.41
ATXN3-227ENST00000554491 MSH5O43196 834 aa17.54■□□□□ 0.4
ATXN3-227ENST00000554491 POTEDQ86YR6 584 aa17.05■□□□□ 0.32
ATXN3-227ENST00000554491 MAPK8IP2Q13387 824 aaPredicted RBP16.23■□□□□ 0.19
ATXN3-227ENST00000554491 SCAF1Q9H7N4 1312 aaKnown RBP16.06■□□□□ 0.16
ATXN3-227ENST00000554491 DMRT2Q9Y5R5 561 aa16.04■□□□□ 0.16
ATXN3-227ENST00000554491 PPP4R3CPQ6ZMV5 832 aa15.87■□□□□ 0.13
ATXN3-227ENST00000554491 CNKSR2Q8WXI2 1034 aa15.52■□□□□ 0.08
ATXN3-227ENST00000554491 HOXD11P31277 338 aaPredicted RBP15.47■□□□□ 0.07
ATXN3-227ENST00000554491 DCAF8L1A6NGE4 600 aa15.4■□□□□ 0.06
ATXN3-227ENST00000554491 RNF216Q9NWF9 866 aaPredicted RBP15.37■□□□□ 0.05
ATXN3-227ENST00000554491 NCBP3Q53F19 620 aaKnown RBP15.23■□□□□ 0.03
ATXN3-227ENST00000554491 NPM3O75607 178 aaKnown RBP15.08■□□□□ 0
ATXN3-227ENST00000554491 CACNB1Q02641 598 aaPredicted RBP15.04■□□□□ -0
ATXN3-227ENST00000554491 RNF39Q9H2S5 420 aa15.02■□□□□ -0
ATXN3-227ENST00000554491 KCNA4P22459 653 aa14.9□□□□□ -0.02
ATXN3-227ENST00000554491 DNAJC5BQ9UF47 199 aa14.85□□□□□ -0.03
ATXN3-227ENST00000554491 C1QBPQ07021 282 aaKnown RBP14.77□□□□□ -0.05
ATXN3-227ENST00000554491 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.75□□□□□ -0.05
ATXN3-227ENST00000554491 U3KPZ7 1027 aaPredicted RBP14.47□□□□□ -0.09
ATXN3-227ENST00000554491 SLC4A2P04920 1241 aa14.41□□□□□ -0.1
ATXN3-227ENST00000554491 SPINK5Q9NQ38 1064 aaPredicted RBP14.27□□□□□ -0.13
ATXN3-227ENST00000554491 CAPN15O75808 1086 aa14.19□□□□□ -0.14
ATXN3-227ENST00000554491 DSG3P32926 999 aa14.1□□□□□ -0.15
ATXN3-227ENST00000554491 SLC4A1APQ9BWU0 796 aaKnown RBP14.04□□□□□ -0.16
ATXN3-227ENST00000554491 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14□□□□□ -0.17
ATXN3-227ENST00000554491 TRHP20396 242 aaPredicted RBP14□□□□□ -0.17
ATXN3-227ENST00000554491 HNRNPUL2Q1KMD3 747 aaKnown RBP14□□□□□ -0.17
ATXN3-227ENST00000554491 APLP2Q06481 763 aa13.96□□□□□ -0.17
ATXN3-227ENST00000554491 SAMD1Q6SPF0 538 aaPredicted RBP13.95□□□□□ -0.18
ATXN3-227ENST00000554491 ABCB7O75027 752 aa13.91□□□□□ -0.18
ATXN3-227ENST00000554491 ZNF219Q9P2Y4 722 aaPredicted RBP13.91□□□□□ -0.18
ATXN3-227ENST00000554491 MYCNP04198 464 aaPredicted RBP13.9□□□□□ -0.18
ATXN3-227ENST00000554491 FOXD4L1Q9NU39 408 aa13.81□□□□□ -0.2
ATXN3-227ENST00000554491 ZBTB22O15209 634 aa13.73□□□□□ -0.21
ATXN3-227ENST00000554491 ATF5Q9Y2D1 282 aaPredicted RBP13.67□□□□□ -0.22
ATXN3-227ENST00000554491 POLA2Q14181 598 aa13.65□□□□□ -0.22
ATXN3-227ENST00000554491 RBM42Q9BTD8 480 aaKnown RBP13.38□□□□□ -0.27
ATXN3-227ENST00000554491 POTEHQ6S545 545 aa13.36□□□□□ -0.27
ATXN3-227ENST00000554491 ATXN8OSP0DMR3 200 aa13.34□□□□□ -0.27
ATXN3-227ENST00000554491 ZBTB12Q9Y330 459 aaPredicted RBP13.29□□□□□ -0.28
ATXN3-227ENST00000554491 OSCARQ8IYS5 282 aa13.22□□□□□ -0.29
ATXN3-227ENST00000554491 CSRNP3Q8WYN3 585 aa13.14□□□□□ -0.31
ATXN3-227ENST00000554491 CHRDL2Q6WN34 429 aa13.12□□□□□ -0.31
ATXN3-227ENST00000554491 AKT1S1Q96B36 256 aa13.12□□□□□ -0.31
ATXN3-227ENST00000554491 REM2Q8IYK8 340 aaPredicted RBP13.04□□□□□ -0.32
ATXN3-227ENST00000554491 FBLN2P98095 1184 aa13.03□□□□□ -0.32
ATXN3-227ENST00000554491 MKRN4PQ13434 485 aaPredicted RBP13.03□□□□□ -0.32
ATXN3-227ENST00000554491 EHMT2Q96KQ7 1210 aa13.03□□□□□ -0.32
ATXN3-227ENST00000554491 SPDYE2BA6NHP3 402 aa12.92□□□□□ -0.34
ATXN3-227ENST00000554491 SPDYE6P0CI01 402 aa12.92□□□□□ -0.34
ATXN3-227ENST00000554491 SPDYE2Q495Y8 402 aa12.92□□□□□ -0.34
ATXN3-227ENST00000554491 PITPNM1O00562 1244 aa12.91□□□□□ -0.34
ATXN3-227ENST00000554491 PIP4P2Q8N4L2 257 aa12.84□□□□□ -0.35
ATXN3-227ENST00000554491 ZNF692Q9BU19 519 aaPredicted RBP12.81□□□□□ -0.36
ATXN3-227ENST00000554491 SSUH2Q9Y2M2 353 aa12.79□□□□□ -0.36
ATXN3-227ENST00000554491 FXR2P51116 673 aaKnown RBP eCLIP12.76□□□□□ -0.37
ATXN3-227ENST00000554491 CLEC11AQ9Y240 323 aa12.69□□□□□ -0.38
ATXN3-227ENST00000554491 SPDYE1Q8NFV5 336 aaPredicted RBP12.68□□□□□ -0.38
ATXN3-227ENST00000554491 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
ATXN3-227ENST00000554491 HAX1O00165 279 aa12.58□□□□□ -0.4
ATXN3-227ENST00000554491 PRKAR2AP13861 404 aaKnown RBP12.56□□□□□ -0.4
ATXN3-227ENST00000554491 SP7Q8TDD2 431 aaPredicted RBP12.56□□□□□ -0.4
ATXN3-227ENST00000554491 EVX2Q03828 476 aa12.49□□□□□ -0.41
ATXN3-227ENST00000554491 PRR29P0C7W0 189 aa12.47□□□□□ -0.41
ATXN3-227ENST00000554491 CHADLQ6NUI6 762 aa12.47□□□□□ -0.41
ATXN3-227ENST00000554491 SPDYE4A6NLX3 237 aa12.41□□□□□ -0.42
ATXN3-227ENST00000554491 C19orf67A6NJJ6 358 aa12.34□□□□□ -0.43
ATXN3-227ENST00000554491 FARP1Q9Y4F1 1045 aaPredicted RBP12.26□□□□□ -0.45
ATXN3-227ENST00000554491 STAG3Q9UJ98 1225 aa12.23□□□□□ -0.45
ATXN3-227ENST00000554491 CREBZFQ9NS37 354 aa12.21□□□□□ -0.45
ATXN3-227ENST00000554491 CD44P16070 742 aaKnown RBP12.16□□□□□ -0.46
ATXN3-227ENST00000554491 GABBR2O75899 941 aa12.15□□□□□ -0.46
ATXN3-227ENST00000554491 PROM2Q8N271 834 aa12.12□□□□□ -0.47
ATXN3-227ENST00000554491 MNX1P50219 401 aaPredicted RBP12.02□□□□□ -0.49
ATXN3-227ENST00000554491 ZRANB1Q9UGI0 708 aa12.01□□□□□ -0.49
ATXN3-227ENST00000554491 ZNF579Q8NAF0 562 aaKnown RBP11.96□□□□□ -0.49
ATXN3-227ENST00000554491 POTEIP0CG38 1075 aa11.93□□□□□ -0.5
ATXN3-227ENST00000554491 NPM1P06748 294 aaKnown RBP eCLIP11.92□□□□□ -0.5
ATXN3-227ENST00000554491 FKBP8Q14318 412 aa11.9□□□□□ -0.5
ATXN3-227ENST00000554491 PHF12Q96QT6 1004 aa11.89□□□□□ -0.51
ATXN3-227ENST00000554491 CLCN6P51797 869 aa11.88□□□□□ -0.51
ATXN3-227ENST00000554491 PAK3O75914 559 aaPredicted RBP11.87□□□□□ -0.51
ATXN3-227ENST00000554491 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
ATXN3-227ENST00000554491 MIER1Q8N108 512 aa11.83□□□□□ -0.52
ATXN3-227ENST00000554491 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
ATXN3-227ENST00000554491 LHX8Q68G74 356 aa11.79□□□□□ -0.52
ATXN3-227ENST00000554491 TSPYL2Q9H2G4 693 aaPredicted RBP11.78□□□□□ -0.52
ATXN3-227ENST00000554491 PLEKHG5O94827 1062 aa11.74□□□□□ -0.53
ATXN3-227ENST00000554491 PLCD3Q8N3E9 789 aa11.73□□□□□ -0.53
ATXN3-227ENST00000554491 RASEFQ8IZ41 740 aa11.71□□□□□ -0.53
ATXN3-227ENST00000554491 CCDC61Q9Y6R9 512 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 195.9 ms