Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L13-201ENST00000554103 1267 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L15-201ENST00000611059 1267 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L23-201ENST00000615195 1269 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L24-201ENST00000617576 1269 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L22-201ENST00000618238 1269 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L20-201ENST00000619712 1269 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L21-201ENST00000622058 1269 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L10-201ENST00000622460 1267 ntBASIC26.27■■□□□ 1.8
CBX4O00257 DUX4L25-201ENST00000624915 1269 ntBASIC26.27■■□□□ 1.8
CBX4O00257 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
CBX4O00257 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.26■■□□□ 1.79
CBX4O00257 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.26■■□□□ 1.79
CBX4O00257 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CBX4O00257 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CBX4O00257 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CBX4O00257 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CBX4O00257 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CBX4O00257 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CBX4O00257 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.25■■□□□ 1.79
CBX4O00257 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CBX4O00257 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.24■■□□□ 1.79
CBX4O00257 MIR3648-2-201ENST00000581792 180 ntBASIC26.24■■□□□ 1.79
CBX4O00257 MIR3648-1-201ENST00000615959 180 ntBASIC26.24■■□□□ 1.79
CBX4O00257 CR559946.2-201ENST00000623684 991 ntBASIC26.24■■□□□ 1.79
CBX4O00257 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.24■■□□□ 1.79
CBX4O00257 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CBX4O00257 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
CBX4O00257 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.23■■□□□ 1.79
CBX4O00257 AP004833.2-201ENST00000532228 1454 ntBASIC26.23■■□□□ 1.79
CBX4O00257 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CBX4O00257 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CBX4O00257 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CBX4O00257 AC016575.1-201ENST00000607026 382 ntBASIC26.22■■□□□ 1.79
CBX4O00257 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CBX4O00257 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
CBX4O00257 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CBX4O00257 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
CBX4O00257 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CBX4O00257 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.22■■□□□ 1.79
CBX4O00257 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CBX4O00257 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CBX4O00257 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CBX4O00257 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
CBX4O00257 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC26.21■■□□□ 1.79
CBX4O00257 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.2■■□□□ 1.79
CBX4O00257 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
CBX4O00257 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.2■■□□□ 1.79
CBX4O00257 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CBX4O00257 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.2■■□□□ 1.78
CBX4O00257 MIR4449-201ENST00000578365 66 ntBASIC26.2■■□□□ 1.78
CBX4O00257 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CBX4O00257 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CBX4O00257 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
CBX4O00257 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CBX4O00257 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CBX4O00257 AC139426.1-201ENST00000568218 2529 ntBASIC26.18■■□□□ 1.78
CBX4O00257 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CBX4O00257 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.17■■□□□ 1.78
CBX4O00257 MIR639-201ENST00000384974 98 ntBASIC26.17■■□□□ 1.78
CBX4O00257 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.17■■□□□ 1.78
CBX4O00257 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.16■■□□□ 1.78
CBX4O00257 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.16■■□□□ 1.78
CBX4O00257 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
CBX4O00257 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.16■■□□□ 1.78
CBX4O00257 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.16■■□□□ 1.78
CBX4O00257 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.16■■□□□ 1.78
CBX4O00257 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CBX4O00257 ABCB10P3-201ENST00000561950 2166 ntBASIC26.15■■□□□ 1.78
CBX4O00257 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.14■■□□□ 1.78
CBX4O00257 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.13■■□□□ 1.77
CBX4O00257 AC100797.4-201ENST00000631653 1827 ntBASIC26.13■■□□□ 1.77
CBX4O00257 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CBX4O00257 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CBX4O00257 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CBX4O00257 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
CBX4O00257 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
CBX4O00257 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.12■■□□□ 1.77
CBX4O00257 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.11■■□□□ 1.77
CBX4O00257 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CBX4O00257 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
CBX4O00257 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CBX4O00257 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CBX4O00257 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CBX4O00257 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.11■■□□□ 1.77
CBX4O00257 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.1■■□□□ 1.77
CBX4O00257 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
CBX4O00257 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CBX4O00257 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.1■■□□□ 1.77
CBX4O00257 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CBX4O00257 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CBX4O00257 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CBX4O00257 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CBX4O00257 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.09■■□□□ 1.77
CBX4O00257 AC110285.7-201ENST00000624417 1536 ntBASIC26.09■■□□□ 1.77
CBX4O00257 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.08■■□□□ 1.77
CBX4O00257 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
CBX4O00257 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CBX4O00257 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.07■■□□□ 1.76
CBX4O00257 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms