Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMKR1H3BMG3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMKR1H3BMG3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMKR1H3BMG3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMKR1H3BMG3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC18.67■□□□□ 0.58
SMKR1H3BMG3 AC010864.1-201ENST00000609407 1511 ntBASIC18.67■□□□□ 0.58
SMKR1H3BMG3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC18.67■□□□□ 0.58
SMKR1H3BMG3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC18.67■□□□□ 0.58
SMKR1H3BMG3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC18.66■□□□□ 0.58
SMKR1H3BMG3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMKR1H3BMG3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMKR1H3BMG3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMKR1H3BMG3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SMKR1H3BMG3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.66■□□□□ 0.58
SMKR1H3BMG3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMKR1H3BMG3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC18.65■□□□□ 0.58
SMKR1H3BMG3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
SMKR1H3BMG3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC18.65■□□□□ 0.58
SMKR1H3BMG3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMKR1H3BMG3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMKR1H3BMG3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMKR1H3BMG3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC18.64■□□□□ 0.58
SMKR1H3BMG3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMKR1H3BMG3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC18.64■□□□□ 0.57
SMKR1H3BMG3 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMKR1H3BMG3 AL031258.1-201ENST00000623562 325 ntBASIC18.63■□□□□ 0.57
SMKR1H3BMG3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMKR1H3BMG3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMKR1H3BMG3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC18.62■□□□□ 0.57
SMKR1H3BMG3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC18.62■□□□□ 0.57
SMKR1H3BMG3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
SMKR1H3BMG3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMKR1H3BMG3 ZNRF2P1-201ENST00000441407 443 ntBASIC18.61■□□□□ 0.57
SMKR1H3BMG3 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMKR1H3BMG3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMKR1H3BMG3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMKR1H3BMG3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMKR1H3BMG3 WASH5P-204ENST00000632292 975 ntBASIC18.6■□□□□ 0.57
SMKR1H3BMG3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMKR1H3BMG3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC18.6■□□□□ 0.57
SMKR1H3BMG3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMKR1H3BMG3 LINC01003-201ENST00000564834 1764 ntBASIC18.59■□□□□ 0.57
SMKR1H3BMG3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMKR1H3BMG3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC18.58■□□□□ 0.57
SMKR1H3BMG3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMKR1H3BMG3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMKR1H3BMG3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMKR1H3BMG3 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC18.58■□□□□ 0.56
SMKR1H3BMG3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMKR1H3BMG3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMKR1H3BMG3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.57■□□□□ 0.56
SMKR1H3BMG3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMKR1H3BMG3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMKR1H3BMG3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMKR1H3BMG3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC18.57■□□□□ 0.56
SMKR1H3BMG3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMKR1H3BMG3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMKR1H3BMG3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC18.56■□□□□ 0.56
SMKR1H3BMG3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMKR1H3BMG3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMKR1H3BMG3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMKR1H3BMG3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.55■□□□□ 0.56
SMKR1H3BMG3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMKR1H3BMG3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC18.54■□□□□ 0.56
SMKR1H3BMG3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMKR1H3BMG3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMKR1H3BMG3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMKR1H3BMG3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMKR1H3BMG3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMKR1H3BMG3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMKR1H3BMG3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMKR1H3BMG3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMKR1H3BMG3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMKR1H3BMG3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMKR1H3BMG3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMKR1H3BMG3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMKR1H3BMG3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMKR1H3BMG3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMKR1H3BMG3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMKR1H3BMG3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SMKR1H3BMG3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC18.49■□□□□ 0.55
SMKR1H3BMG3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMKR1H3BMG3 AC091060.1-201ENST00000623524 1766 ntBASIC18.48■□□□□ 0.55
SMKR1H3BMG3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SMKR1H3BMG3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SMKR1H3BMG3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMKR1H3BMG3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMKR1H3BMG3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMKR1H3BMG3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SMKR1H3BMG3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMKR1H3BMG3 AP004833.2-201ENST00000532228 1454 ntBASIC18.47■□□□□ 0.55
SMKR1H3BMG3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SMKR1H3BMG3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.47■□□□□ 0.55
SMKR1H3BMG3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
SMKR1H3BMG3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC18.47■□□□□ 0.55
SMKR1H3BMG3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMKR1H3BMG3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
SMKR1H3BMG3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMKR1H3BMG3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SMKR1H3BMG3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms