Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.44■■□□□ 1.5
RNF103-CHMP3A0A140T963 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.44■■□□□ 1.5
RNF103-CHMP3A0A140T963 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RNF103-CHMP3A0A140T963 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
RNF103-CHMP3A0A140T963 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.44■■□□□ 1.5
RNF103-CHMP3A0A140T963 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF103-CHMP3A0A140T963 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF103-CHMP3A0A140T963 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.43■■□□□ 1.5
RNF103-CHMP3A0A140T963 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.43■■□□□ 1.5
RNF103-CHMP3A0A140T963 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.42■■□□□ 1.5
RNF103-CHMP3A0A140T963 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF103-CHMP3A0A140T963 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF103-CHMP3A0A140T963 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF103-CHMP3A0A140T963 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RNF103-CHMP3A0A140T963 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.41■■□□□ 1.5
RNF103-CHMP3A0A140T963 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RNF103-CHMP3A0A140T963 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
RNF103-CHMP3A0A140T963 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.41■■□□□ 1.5
RNF103-CHMP3A0A140T963 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
RNF103-CHMP3A0A140T963 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
RNF103-CHMP3A0A140T963 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
RNF103-CHMP3A0A140T963 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
RNF103-CHMP3A0A140T963 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
RNF103-CHMP3A0A140T963 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RNF103-CHMP3A0A140T963 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RNF103-CHMP3A0A140T963 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RNF103-CHMP3A0A140T963 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.38■■□□□ 1.49
RNF103-CHMP3A0A140T963 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RNF103-CHMP3A0A140T963 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
RNF103-CHMP3A0A140T963 MIR762-201ENST00000390236 83 ntBASIC24.37■■□□□ 1.49
RNF103-CHMP3A0A140T963 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.37■■□□□ 1.49
RNF103-CHMP3A0A140T963 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RNF103-CHMP3A0A140T963 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RNF103-CHMP3A0A140T963 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RNF103-CHMP3A0A140T963 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
RNF103-CHMP3A0A140T963 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RNF103-CHMP3A0A140T963 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.35■■□□□ 1.49
RNF103-CHMP3A0A140T963 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
RNF103-CHMP3A0A140T963 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
RNF103-CHMP3A0A140T963 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF103-CHMP3A0A140T963 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF103-CHMP3A0A140T963 AC127502.1-201ENST00000399971 1502 ntBASIC24.33■■□□□ 1.49
RNF103-CHMP3A0A140T963 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RNF103-CHMP3A0A140T963 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.32■■□□□ 1.48
RNF103-CHMP3A0A140T963 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
RNF103-CHMP3A0A140T963 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RNF103-CHMP3A0A140T963 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF103-CHMP3A0A140T963 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.31■■□□□ 1.48
RNF103-CHMP3A0A140T963 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.31■■□□□ 1.48
RNF103-CHMP3A0A140T963 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RNF103-CHMP3A0A140T963 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.31■■□□□ 1.48
RNF103-CHMP3A0A140T963 CHML-205ENST00000638160 705 ntTSL 3 BASIC24.31■■□□□ 1.48
RNF103-CHMP3A0A140T963 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 SUZ12P1-203ENST00000578195 985 ntBASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF103-CHMP3A0A140T963 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF103-CHMP3A0A140T963 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.29■■□□□ 1.48
RNF103-CHMP3A0A140T963 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF103-CHMP3A0A140T963 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF103-CHMP3A0A140T963 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
RNF103-CHMP3A0A140T963 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.29■■□□□ 1.48
RNF103-CHMP3A0A140T963 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
RNF103-CHMP3A0A140T963 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.28■■□□□ 1.48
RNF103-CHMP3A0A140T963 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF103-CHMP3A0A140T963 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
RNF103-CHMP3A0A140T963 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
RNF103-CHMP3A0A140T963 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF103-CHMP3A0A140T963 AP004833.2-201ENST00000532228 1454 ntBASIC24.26■■□□□ 1.47
RNF103-CHMP3A0A140T963 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.26■■□□□ 1.47
RNF103-CHMP3A0A140T963 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
RNF103-CHMP3A0A140T963 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
RNF103-CHMP3A0A140T963 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.26■■□□□ 1.47
RNF103-CHMP3A0A140T963 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RNF103-CHMP3A0A140T963 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF103-CHMP3A0A140T963 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
RNF103-CHMP3A0A140T963 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.24■■□□□ 1.47
RNF103-CHMP3A0A140T963 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
RNF103-CHMP3A0A140T963 HNRNPLP2-201ENST00000568980 1570 ntBASIC24.24■■□□□ 1.47
RNF103-CHMP3A0A140T963 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RNF103-CHMP3A0A140T963 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RNF103-CHMP3A0A140T963 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
RNF103-CHMP3A0A140T963 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.22■■□□□ 1.47
RNF103-CHMP3A0A140T963 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
RNF103-CHMP3A0A140T963 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RNF103-CHMP3A0A140T963 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RNF103-CHMP3A0A140T963 AC005559.1-201ENST00000589661 871 ntBASIC24.22■■□□□ 1.47
RNF103-CHMP3A0A140T963 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RNF103-CHMP3A0A140T963 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF103-CHMP3A0A140T963 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.21■■□□□ 1.47
RNF103-CHMP3A0A140T963 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF103-CHMP3A0A140T963 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
RNF103-CHMP3A0A140T963 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF103-CHMP3A0A140T963 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF103-CHMP3A0A140T963 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
RNF103-CHMP3A0A140T963 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms