Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 PGM5P4-201ENST00000421970 445 ntBASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 CREM-229ENST00000474362 1030 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 QDPR-206ENST00000508623 601 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 AICDA-202ENST00000537228 667 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 AL512631.2-201ENST00000604634 923 ntBASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRAV1-1A0A0B4J248 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 KRT16P3-201ENST00000439127 1283 ntBASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 AC138907.5-202ENST00000569484 235 ntBASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC15.27■□□□□ 0.04
TRAV1-1A0A0B4J248 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV1-1A0A0B4J248 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 AL358852.1-201ENST00000623174 1268 ntBASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 CPT2-209ENST00000636935 803 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRAV1-1A0A0B4J248 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 AC091799.1-201ENST00000422823 811 ntBASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms