RNA–Protein interactions for RNA: ENST00000409860.1

C4orf48-202, Transcript of chromosome 4 open reading frame 48, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C4orf48, Length 477 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C4orf48-202ENST00000409860 NISCHQ9Y2I1 1504 aa48.88■■■■■ 5.42
C4orf48-202ENST00000409860 CCDC180Q9P1Z9 1646 aa43.16■■■■■ 4.5
C4orf48-202ENST00000409860 ABCC9O60706 1549 aa41.7■■■■■ 4.27
C4orf48-202ENST00000409860 ZCCHC6Q5VYS8 1495 aaKnown RBP40.86■■■■■ 4.13
C4orf48-202ENST00000409860 DCAF8L2P0C7V8 631 aa40.65■■■■■ 4.1
C4orf48-202ENST00000409860 DCAF1Q9Y4B6 1507 aa40.48■■■■■ 4.07
C4orf48-202ENST00000409860 NACADO15069 1562 aa40.48■■■■■ 4.07
C4orf48-202ENST00000409860 MYO15BQ96JP2 1530 aa40.43■■■■■ 4.06
C4orf48-202ENST00000409860 RB1CC1Q8TDY2 1594 aa40.38■■■■■ 4.05
C4orf48-202ENST00000409860 SCRIBQ14160 1630 aa39.46■■■■□ 3.91
C4orf48-202ENST00000409860 UNC13AQ9UPW8 1703 aa39.33■■■■□ 3.89
C4orf48-202ENST00000409860 PABPN1Q86U42 306 aaKnown RBP eCLIP39.09■■■■□ 3.85
C4orf48-202ENST00000409860 BICRAQ9NZM4 1560 aa39.08■■■■□ 3.85
C4orf48-202ENST00000409860 SHROOM4Q9ULL8 1493 aa39.02■■■■□ 3.84
C4orf48-202ENST00000409860 EIF4G1Q04637 1599 aaKnown RBP38.04■■■■□ 3.68
C4orf48-202ENST00000409860 CECR2Q9BXF3 1484 aa38■■■■□ 3.67
C4orf48-202ENST00000409860 BAZ1AQ9NRL2 1556 aaPredicted RBP37.87■■■■□ 3.65
C4orf48-202ENST00000409860 SMARCA4P51532 1647 aa37.79■■■■□ 3.64
C4orf48-202ENST00000409860 CC2D2AQ9P2K1 1620 aa37.72■■■■□ 3.63
C4orf48-202ENST00000409860 DNAJC5BQ9UF47 199 aa37.68■■■■□ 3.62
C4orf48-202ENST00000409860 MROH2BQ7Z745 1585 aa37.68■■■■□ 3.62
C4orf48-202ENST00000409860 RSF1Q96T23 1441 aaPredicted RBP37.48■■■■□ 3.59
C4orf48-202ENST00000409860 ATAD2BQ9ULI0 1458 aa37.46■■■■□ 3.59
C4orf48-202ENST00000409860 SMARCA2P51531 1590 aa37.46■■■■□ 3.59
C4orf48-202ENST00000409860 PEG3Q9GZU2 1588 aa37.41■■■■□ 3.58
C4orf48-202ENST00000409860 NCAPD3P42695 1498 aa37.34■■■■□ 3.57
C4orf48-202ENST00000409860 WIZO95785 1651 aa37.26■■■■□ 3.56
C4orf48-202ENST00000409860 HMGXB3Q12766 1538 aa37.22■■■■□ 3.55
C4orf48-202ENST00000409860 BAZ1BQ9UIG0 1483 aaKnown RBP37.2■■■■□ 3.55
C4orf48-202ENST00000409860 SUPT5HO00267 1087 aaKnown RBP37.03■■■■□ 3.52
C4orf48-202ENST00000409860 TOP2AP11388 1531 aaKnown RBP36.96■■■■□ 3.51
C4orf48-202ENST00000409860 CCDC88BA6NC98 1476 aa36.51■■■■□ 3.44
C4orf48-202ENST00000409860 CADPSQ9ULU8 1353 aa36.32■■■■□ 3.4
C4orf48-202ENST00000409860 LAMC3Q9Y6N6 1575 aa36.25■■■■□ 3.39
C4orf48-202ENST00000409860 NESP48681 1621 aa36.24■■■■□ 3.39
C4orf48-202ENST00000409860 CFTRP13569 1480 aa36.2■■■■□ 3.39
C4orf48-202ENST00000409860 PDS5BQ9NTI5 1447 aa36.04■■■■□ 3.36
C4orf48-202ENST00000409860 ERCC6Q03468 1493 aa35.94■■■■□ 3.34
C4orf48-202ENST00000409860 FANCD2Q9BXW9 1451 aa35.89■■■■□ 3.34
C4orf48-202ENST00000409860 PRDM2Q13029 1718 aa35.88■■■■□ 3.34
C4orf48-202ENST00000409860 CEP164Q9UPV0 1460 aa35.8■■■■□ 3.32
C4orf48-202ENST00000409860 KIF21AQ7Z4S6 1674 aa35.78■■■■□ 3.32
C4orf48-202ENST00000409860 MRC2Q9UBG0 1479 aa35.62■■■■□ 3.29
C4orf48-202ENST00000409860 THOC2Q8NI27 1593 aaKnown RBP35.55■■■■□ 3.28
C4orf48-202ENST00000409860 URB2Q14146 1524 aaKnown RBP35.47■■■■□ 3.27
C4orf48-202ENST00000409860 WDR62O43379 1518 aa35.46■■■■□ 3.27
C4orf48-202ENST00000409860 ABCC8Q09428 1581 aa35.42■■■■□ 3.26
C4orf48-202ENST00000409860 DNMBPQ6XZF7 1577 aa35.38■■■■□ 3.25
C4orf48-202ENST00000409860 TOPBP1Q92547 1522 aa35.37■■■■□ 3.25
C4orf48-202ENST00000409860 WRNQ14191 1432 aaPredicted RBP eCLIP35.36■■■■□ 3.25
C4orf48-202ENST00000409860 CUX2O14529 1486 aa35.32■■■■□ 3.24
C4orf48-202ENST00000409860 CUX1P39880 1505 aa35.32■■■■□ 3.24
C4orf48-202ENST00000409860 SYNJ1O43426 1573 aa35.18■■■■□ 3.22
C4orf48-202ENST00000409860 TOP2BQ02880 1626 aa35.17■■■■□ 3.22
C4orf48-202ENST00000409860 BIVM-ERCC5R4GMW8 1640 aa35.14■■■■□ 3.22
C4orf48-202ENST00000409860 FGD5Q6ZNL6 1462 aa35.12■■■■□ 3.21
C4orf48-202ENST00000409860 POLA1P09884 1462 aaPredicted RBP35.11■■■■□ 3.21
C4orf48-202ENST00000409860 IFT140Q96RY7 1462 aa35.03■■■■□ 3.2
C4orf48-202ENST00000409860 SOGA1O94964 1423 aa34.99■■■■□ 3.19
C4orf48-202ENST00000409860 TRIM41Q8WV44 630 aa34.96■■■■□ 3.19
C4orf48-202ENST00000409860 RAD54L2Q9Y4B4 1467 aa34.95■■■■□ 3.19
C4orf48-202ENST00000409860 CHIC1Q5VXU3 224 aa34.89■■■■□ 3.18
C4orf48-202ENST00000409860 TARBP1Q13395 1621 aaKnown RBP34.88■■■■□ 3.17
C4orf48-202ENST00000409860 ABCA10Q8WWZ4 1543 aa34.81■■■■□ 3.16
C4orf48-202ENST00000409860 ZNF608Q9ULD9 1512 aaPredicted RBP34.78■■■■□ 3.16
C4orf48-202ENST00000409860 WDR97A6NE52 1622 aa34.73■■■■□ 3.15
C4orf48-202ENST00000409860 TDRD9Q8NDG6 1382 aaKnown RBP34.72■■■■□ 3.15
C4orf48-202ENST00000409860 AQRO60306 1485 aaKnown RBP eCLIP34.67■■■■□ 3.141e-7■■□□□ 13.1
C4orf48-202ENST00000409860 EIF4G3O43432 1585 aaKnown RBP34.66■■■■□ 3.14
C4orf48-202ENST00000409860 GAPVD1Q14C86 1478 aa34.6■■■■□ 3.13
C4orf48-202ENST00000409860 KIF27Q86VH2 1401 aa34.59■■■■□ 3.13
C4orf48-202ENST00000409860 ABCA5Q8WWZ7 1642 aa34.59■■■■□ 3.13
C4orf48-202ENST00000409860 GRIN2BQ13224 1484 aa34.52■■■■□ 3.12
C4orf48-202ENST00000409860 PBRM1Q86U86 1689 aa34.41■■■■□ 3.1
C4orf48-202ENST00000409860 ERICH3Q5RHP9 1530 aa34.4■■■■□ 3.1
C4orf48-202ENST00000409860 SNAPC4Q5SXM2 1469 aa34.39■■■■□ 3.1
C4orf48-202ENST00000409860 RUSC2Q8N2Y8 1516 aa34.38■■■■□ 3.09
C4orf48-202ENST00000409860 MAGI1Q96QZ7 1491 aaPredicted RBP34.37■■■■□ 3.09
C4orf48-202ENST00000409860 EEA1Q15075 1411 aa34.34■■■■□ 3.09
C4orf48-202ENST00000409860 IGF1RP08069 1367 aa34.34■■■■□ 3.09
C4orf48-202ENST00000409860 FHAD1B1AJZ9 1412 aa34.24■■■■□ 3.07
C4orf48-202ENST00000409860 ADAMTS12P58397 1594 aa34.23■■■■□ 3.07
C4orf48-202ENST00000409860 SYNJ2O15056 1496 aa34.22■■■■□ 3.07
C4orf48-202ENST00000409860 FAM9AQ8IZU1 332 aaPredicted RBP34.21■■■■□ 3.07
C4orf48-202ENST00000409860 CUL7Q14999 1698 aa34.19■■■■□ 3.06
C4orf48-202ENST00000409860 FBLN2P98095 1184 aa34.19■■■■□ 3.06
C4orf48-202ENST00000409860 CHMP7Q8WUX9 453 aaPredicted RBP34.19■■■■□ 3.06
C4orf48-202ENST00000409860 CSRNP3Q8WYN3 585 aa34.18■■■■□ 3.06
C4orf48-202ENST00000409860 CARMIL1Q5VZK9 1371 aa34.17■■■■□ 3.06
C4orf48-202ENST00000409860 GRIN2AQ12879 1464 aa34.07■■■■□ 3.04
C4orf48-202ENST00000409860 CHD1O14646 1710 aa34.06■■■■□ 3.04
C4orf48-202ENST00000409860 PRXQ9BXM0 1461 aa34.04■■■■□ 3.04
C4orf48-202ENST00000409860 RAPGEF2Q9Y4G8 1499 aa34.03■■■■□ 3.04
C4orf48-202ENST00000409860 OSCARQ8IYS5 282 aa33.98■■■■□ 3.03
C4orf48-202ENST00000409860 NUP160Q12769 1436 aa33.89■■■■□ 3.02
C4orf48-202ENST00000409860 KIF21BO75037 1637 aa33.88■■■■□ 3.01
C4orf48-202ENST00000409860 CEP170Q5SW79 1584 aa33.84■■■■□ 3.01
C4orf48-202ENST00000409860 GOLGA3Q08378 1498 aa33.77■■■■□ 3
C4orf48-202ENST00000409860 CLASP1Q7Z460 1538 aa33.75■■■□□ 2.99
C4orf48-202ENST00000409860 KIAA0586Q9BVV6 1533 aa33.73■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms