Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.67■■□□□ 1.06
PEX3P56589 KRT16P5-201ENST00000455284 522 ntBASIC21.67■■□□□ 1.06
PEX3P56589 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
PEX3P56589 AC004264.1-201ENST00000608354 794 ntBASIC21.67■■□□□ 1.06
PEX3P56589 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.67■■□□□ 1.06
PEX3P56589 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.67■■□□□ 1.06
PEX3P56589 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PEX3P56589 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.67■■□□□ 1.06
PEX3P56589 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.67■■□□□ 1.06
PEX3P56589 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PEX3P56589 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PEX3P56589 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
PEX3P56589 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.66■■□□□ 1.06
PEX3P56589 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.66■■□□□ 1.06
PEX3P56589 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.66■■□□□ 1.06
PEX3P56589 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PEX3P56589 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.66■■□□□ 1.06
PEX3P56589 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.66■■□□□ 1.06
PEX3P56589 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.66■■□□□ 1.06
PEX3P56589 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
PEX3P56589 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.66■■□□□ 1.06
PEX3P56589 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PEX3P56589 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PEX3P56589 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.65■■□□□ 1.06
PEX3P56589 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.65■■□□□ 1.06
PEX3P56589 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
PEX3P56589 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
PEX3P56589 AC066615.1-201ENST00000640911 628 ntBASIC21.65■■□□□ 1.06
PEX3P56589 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
PEX3P56589 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.65■■□□□ 1.06
PEX3P56589 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PEX3P56589 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.65■■□□□ 1.06
PEX3P56589 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PEX3P56589 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
PEX3P56589 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PEX3P56589 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
PEX3P56589 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PEX3P56589 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.64■■□□□ 1.06
PEX3P56589 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PEX3P56589 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.64■■□□□ 1.05
PEX3P56589 KRT18P16-201ENST00000510337 1294 ntBASIC21.64■■□□□ 1.05
PEX3P56589 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.64■■□□□ 1.05
PEX3P56589 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.64■■□□□ 1.05
PEX3P56589 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PEX3P56589 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
PEX3P56589 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
PEX3P56589 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.64■■□□□ 1.05
PEX3P56589 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PEX3P56589 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.64■■□□□ 1.05
PEX3P56589 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PEX3P56589 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.63■■□□□ 1.05
PEX3P56589 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PEX3P56589 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PEX3P56589 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PEX3P56589 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.63■■□□□ 1.05
PEX3P56589 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.63■■□□□ 1.05
PEX3P56589 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.63■■□□□ 1.05
PEX3P56589 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PEX3P56589 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.63■■□□□ 1.05
PEX3P56589 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PEX3P56589 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PEX3P56589 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PEX3P56589 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.62■■□□□ 1.05
PEX3P56589 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PEX3P56589 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PEX3P56589 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PEX3P56589 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
PEX3P56589 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PEX3P56589 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
PEX3P56589 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
PEX3P56589 TUBB8P6-201ENST00000436895 1288 ntBASIC21.62■■□□□ 1.05
PEX3P56589 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.62■■□□□ 1.05
PEX3P56589 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PEX3P56589 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PEX3P56589 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PEX3P56589 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms