Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC025884.2-201ENST00000553429 711 ntBASIC12.33□□□□□ -0.44
LINC00643Q86TS7 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 GATM-206ENST00000558336 1522 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00643Q86TS7 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00643Q86TS7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 OR7E47P-201ENST00000546390 1422 ntBASIC12.3□□□□□ -0.44
LINC00643Q86TS7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00643Q86TS7 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms