Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MAPK3-211ENST00000483869 738 ntTSL 312.8□□□□□ -0.364e-11■■□□□ 12.9
DDX55Q8NHQ9 MAPK3-210ENST00000481230 465 ntTSL 510.9□□□□□ -0.664e-11■■□□□ 12.9
DDX55Q8NHQ9 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.085e-18■■□□□ 12.9
DDX55Q8NHQ9 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.187e-12■■□□□ 12.8
DDX55Q8NHQ9 ISM2-201ENST00000216481 3045 ntTSL 213.89□□□□□ -0.193e-7■■□□□ 12.8
DDX55Q8NHQ9 ISM2-202ENST00000342219 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.373e-7■■□□□ 12.8
DDX55Q8NHQ9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.66■□□□□ 0.93e-7■■□□□ 12.8
DDX55Q8NHQ9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.733e-7■■□□□ 12.8
DDX55Q8NHQ9 SLC12A4-209ENST00000572037 3620 ntTSL 2 BASIC12.65□□□□□ -0.383e-7■■□□□ 12.8
DDX55Q8NHQ9 SLC12A4-204ENST00000541864 3627 ntTSL 2 BASIC12.09□□□□□ -0.473e-7■■□□□ 12.8
DDX55Q8NHQ9 SLC12A4-219ENST00000576616 3768 ntTSL 2 BASIC11.96□□□□□ -0.53e-7■■□□□ 12.8
DDX55Q8NHQ9 SLC12A4-206ENST00000570802 3761 ntTSL 211.46□□□□□ -0.573e-7■■□□□ 12.8
DDX55Q8NHQ9 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.33■■□□□ 1.332e-9■■□□□ 12.8
DDX55Q8NHQ9 SMARCD2-204ENST00000450364 993 ntTSL 516.95■□□□□ 0.32e-9■■□□□ 12.8
DDX55Q8NHQ9 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.91■□□□□ 0.32e-9■■□□□ 12.8
DDX55Q8NHQ9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.752e-55■■□□□ 12.8
DDX55Q8NHQ9 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.15■□□□□ 0.342e-55■■□□□ 12.8
DDX55Q8NHQ9 MYL4-204ENST00000570671 740 ntTSL 213.03□□□□□ -0.327e-12■■□□□ 12.8
DDX55Q8NHQ9 PFDN5-210ENST00000550513 939 ntTSL 313.6□□□□□ -0.232e-11■■□□□ 12.8
DDX55Q8NHQ9 MIIP-204ENST00000478299 595 ntTSL 219.05■□□□□ 0.641e-8■■□□□ 12.8
DDX55Q8NHQ9 NME1-204ENST00000456492 510 ntTSL 26.11□□□□□ -1.432e-6■■□□□ 12.8
DDX55Q8NHQ9 NEDD8-202ENST00000396828 626 ntTSL 212.92□□□□□ -0.344e-11■■□□□ 12.8
DDX55Q8NHQ9 NEDD8-205ENST00000527046 847 ntTSL 212.91□□□□□ -0.343e-15■■□□□ 12.8
DDX55Q8NHQ9 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.03■■■□□ 2.721e-21■■□□□ 12.8
DDX55Q8NHQ9 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.491e-21■■□□□ 12.8
DDX55Q8NHQ9 KHSRP-203ENST00000594745 379 ntTSL 317.99■□□□□ 0.471e-21■■□□□ 12.8
DDX55Q8NHQ9 KHSRP-208ENST00000597656 328 ntTSL 510.01□□□□□ -0.811e-21■■□□□ 12.8
DDX55Q8NHQ9 PSME2-203ENST00000558273 1502 ntTSL 219.41■□□□□ 0.72e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-212ENST00000560370 620 ntTSL 318.95■□□□□ 0.622e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.32e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-202ENST00000471700 706 ntTSL 316.92■□□□□ 0.32e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-206ENST00000559042 643 nt16.41■□□□□ 0.222e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-204ENST00000558931 2754 ntTSL 515.76■□□□□ 0.112e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-217ENST00000615264 874 ntTSL 5 BASIC15.67■□□□□ 0.12e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-213ENST00000560410 755 ntTSL 3 BASIC14.79□□□□□ -0.042e-7■■□□□ 12.8
DDX55Q8NHQ9 PSME2-209ENST00000559453 1721 ntTSL 510.7□□□□□ -0.72e-7■■□□□ 12.8
DDX55Q8NHQ9 RPL21-210ENST00000493317 438 ntTSL 23.34□□□□□ -1.872e-20■■□□□ 12.8
DDX55Q8NHQ9 AC011481.3-201ENST00000623895 5594 ntBASIC14.18□□□□□ -0.142e-17■■□□□ 12.8
DDX55Q8NHQ9 APOC1-204ENST00000589078 213 ntTSL 211.64□□□□□ -0.552e-17■■□□□ 12.8
DDX55Q8NHQ9 COPG2-202ENST00000425248 3134 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.525e-11■■□□□ 12.8
DDX55Q8NHQ9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.646e-7■■□□□ 12.8
DDX55Q8NHQ9 PPP1R35-205ENST00000491407 942 ntTSL 533.95■■■■□ 3.036e-7■■□□□ 12.8
DDX55Q8NHQ9 PPP1R35-204ENST00000487452 965 ntTSL 233.66■■■□□ 2.986e-7■■□□□ 12.8
DDX55Q8NHQ9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.916e-7■■□□□ 12.8
DDX55Q8NHQ9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.632e-6■■□□□ 12.8
DDX55Q8NHQ9 AURKAIP1-205ENST00000489799 695 ntTSL 1 (best)29.12■■■□□ 2.252e-6■■□□□ 12.8
DDX55Q8NHQ9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.054e-9■■□□□ 12.8
DDX55Q8NHQ9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.832e-6■■□□□ 12.8
DDX55Q8NHQ9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.82e-6■■□□□ 12.8
DDX55Q8NHQ9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.739e-8■■□□□ 12.8
DDX55Q8NHQ9 PTP4A3-205ENST00000523147 558 ntTSL 525.8■■□□□ 1.729e-8■■□□□ 12.8
DDX55Q8NHQ9 MAN2C1-240ENST00000569176 966 ntTSL 224.4■■□□□ 1.52e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-211ENST00000623632 847 ntTSL 523.85■■□□□ 1.412e-6■■□□□ 12.8
DDX55Q8NHQ9 CDK16-217ENST00000522234 1679 ntTSL 223.32■■□□□ 1.322e-6■■□□□ 12.8
DDX55Q8NHQ9 MAN2C1-211ENST00000563368 755 ntTSL 323.13■■□□□ 1.292e-6■■□□□ 12.8
DDX55Q8NHQ9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.292e-6■■□□□ 12.8
DDX55Q8NHQ9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.05■■□□□ 1.289e-8■■□□□ 12.8
DDX55Q8NHQ9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.262e-6■■□□□ 12.8
DDX55Q8NHQ9 AURKAIP1-206ENST00000496905 608 ntTSL 222.8■■□□□ 1.242e-6■■□□□ 12.8
DDX55Q8NHQ9 RANBP1-213ENST00000486575 2177 ntTSL 222.71■■□□□ 1.233e-25■■□□□ 12.8
DDX55Q8NHQ9 RANBP1-210ENST00000435265 1879 ntTSL 222.56■■□□□ 1.23e-25■■□□□ 12.8
DDX55Q8NHQ9 TRIM47-204ENST00000587339 1907 ntTSL 1 (best)22.45■■□□□ 1.182e-6■■□□□ 12.8
DDX55Q8NHQ9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC22.32■■□□□ 1.162e-6■■□□□ 12.8
DDX55Q8NHQ9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.162e-6■■□□□ 12.8
DDX55Q8NHQ9 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.122e-6■■□□□ 12.8
DDX55Q8NHQ9 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC22.01■■□□□ 1.112e-6■■□□□ 12.8
DDX55Q8NHQ9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.022e-6■■□□□ 12.8
DDX55Q8NHQ9 FAM20C-205ENST00000515795 2177 ntTSL 1 (best)21.38■■□□□ 1.012e-6■■□□□ 12.8
DDX55Q8NHQ9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.012e-6■■□□□ 12.8
DDX55Q8NHQ9 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC21.35■■□□□ 1.014e-9■■□□□ 12.8
DDX55Q8NHQ9 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.893e-6■■□□□ 12.8
DDX55Q8NHQ9 WDTC1-204ENST00000472249 628 ntTSL 520.61■□□□□ 0.892e-6■■□□□ 12.8
DDX55Q8NHQ9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.53■□□□□ 0.885e-24■■□□□ 12.8
DDX55Q8NHQ9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.82e-6■■□□□ 12.8
DDX55Q8NHQ9 IDH3B-209ENST00000488299 1620 ntTSL 219.94■□□□□ 0.783e-6■■□□□ 12.8
DDX55Q8NHQ9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.61■□□□□ 0.732e-6■■□□□ 12.8
DDX55Q8NHQ9 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.73e-6■■□□□ 12.8
DDX55Q8NHQ9 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.72e-6■■□□□ 12.8
DDX55Q8NHQ9 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.15■□□□□ 0.669e-8■■□□□ 12.8
DDX55Q8NHQ9 ADSL-218ENST00000636265 1239 ntTSL 519.06■□□□□ 0.642e-6■■□□□ 12.8
DDX55Q8NHQ9 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.642e-6■■□□□ 12.8
DDX55Q8NHQ9 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.593e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.542e-6■■□□□ 12.8
DDX55Q8NHQ9 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.4■□□□□ 0.549e-8■■□□□ 12.8
DDX55Q8NHQ9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.33■□□□□ 0.522e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-222ENST00000637669 1927 ntTSL 518.31■□□□□ 0.522e-6■■□□□ 12.8
DDX55Q8NHQ9 ARFGAP1-205ENST00000468975 2640 ntTSL 218.23■□□□□ 0.513e-7■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.93■□□□□ 0.462e-6■■□□□ 12.8
DDX55Q8NHQ9 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.453e-25■■□□□ 12.8
DDX55Q8NHQ9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.429e-8■■□□□ 12.8
DDX55Q8NHQ9 IDH3B-207ENST00000477689 608 ntTSL 517.61■□□□□ 0.413e-6■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-212ENST00000586985 534 ntTSL 517.55■□□□□ 0.42e-6■■□□□ 12.8
DDX55Q8NHQ9 CMTR1-203ENST00000457419 769 ntTSL 317.5■□□□□ 0.395e-8■■□□□ 12.8
DDX55Q8NHQ9 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC17.46■□□□□ 0.395e-15■■□□□ 12.8
DDX55Q8NHQ9 ARFGAP1-204ENST00000395285 2697 ntTSL 217.44■□□□□ 0.383e-7■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.4■□□□□ 0.382e-6■■□□□ 12.8
DDX55Q8NHQ9 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.07■□□□□ 0.324e-9■■□□□ 12.8
DDX55Q8NHQ9 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.32e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC16.92■□□□□ 0.32e-6■■□□□ 12.8
DDX55Q8NHQ9 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.32e-6■■□□□ 12.8
Retrieved 100 of 15,504 protein–RNA pairs in 117 ms