RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 NISCHQ9Y2I1 1504 aa44.75■■■■■ 4.76
TRIM47-204ENST00000587339 CCDC180Q9P1Z9 1646 aa38.95■■■■□ 3.83
TRIM47-204ENST00000587339 ZCCHC6Q5VYS8 1495 aaKnown RBP37.6■■■■□ 3.61
TRIM47-204ENST00000587339 DCAF8L2P0C7V8 631 aa37.06■■■■□ 3.52
TRIM47-204ENST00000587339 DCAF1Q9Y4B6 1507 aa36.98■■■■□ 3.51
TRIM47-204ENST00000587339 ABCC9O60706 1549 aa36.86■■■■□ 3.49
TRIM47-204ENST00000587339 SHROOM4Q9ULL8 1493 aa36.62■■■■□ 3.45
TRIM47-204ENST00000587339 MYO15BQ96JP2 1530 aa36.52■■■■□ 3.44
TRIM47-204ENST00000587339 NACADO15069 1562 aa36.29■■■■□ 3.4
TRIM47-204ENST00000587339 RB1CC1Q8TDY2 1594 aa35.98■■■■□ 3.35
TRIM47-204ENST00000587339 SCRIBQ14160 1630 aa35.88■■■■□ 3.33
TRIM47-204ENST00000587339 SUPT5HO00267 1087 aaKnown RBP35.3■■■■□ 3.24
TRIM47-204ENST00000587339 UNC13AQ9UPW8 1703 aa35.21■■■■□ 3.23
TRIM47-204ENST00000587339 BICRAQ9NZM4 1560 aa34.87■■■■□ 3.17
TRIM47-204ENST00000587339 PABPN1Q86U42 306 aaKnown RBP eCLIP34.8■■■■□ 3.16
TRIM47-204ENST00000587339 CECR2Q9BXF3 1484 aa34.79■■■■□ 3.16
TRIM47-204ENST00000587339 RSF1Q96T23 1441 aaPredicted RBP34.76■■■■□ 3.16
TRIM47-204ENST00000587339 MROH2BQ7Z745 1585 aa34.59■■■■□ 3.13
TRIM47-204ENST00000587339 BAZ1AQ9NRL2 1556 aaPredicted RBP34.56■■■■□ 3.12
TRIM47-204ENST00000587339 SMARCA4P51532 1647 aa34.38■■■■□ 3.09
TRIM47-204ENST00000587339 WIZO95785 1651 aa34.3■■■■□ 3.08
TRIM47-204ENST00000587339 PEG3Q9GZU2 1588 aa33.95■■■■□ 3.02
TRIM47-204ENST00000587339 TOP2AP11388 1531 aaKnown RBP33.94■■■■□ 3.02
TRIM47-204ENST00000587339 EIF4G1Q04637 1599 aaKnown RBP33.84■■■■□ 3.01
TRIM47-204ENST00000587339 ATAD2BQ9ULI0 1458 aa33.82■■■■□ 3
TRIM47-204ENST00000587339 SMARCA2P51531 1590 aa33.8■■■■□ 3
TRIM47-204ENST00000587339 CHIC1Q5VXU3 224 aa33.77■■■■□ 3
TRIM47-204ENST00000587339 BAZ1BQ9UIG0 1483 aaKnown RBP33.65■■■□□ 2.98
TRIM47-204ENST00000587339 CCDC88BA6NC98 1476 aa33.61■■■□□ 2.97
TRIM47-204ENST00000587339 NCAPD3P42695 1498 aa33.52■■■□□ 2.96
TRIM47-204ENST00000587339 HMGXB3Q12766 1538 aa33.46■■■□□ 2.95
TRIM47-204ENST00000587339 CC2D2AQ9P2K1 1620 aa33.33■■■□□ 2.93
TRIM47-204ENST00000587339 TRIM41Q8WV44 630 aa33.18■■■□□ 2.9
TRIM47-204ENST00000587339 ABCC8Q09428 1581 aa32.94■■■□□ 2.86
TRIM47-204ENST00000587339 CFTRP13569 1480 aa32.8■■■□□ 2.84
TRIM47-204ENST00000587339 WRNQ14191 1432 aaPredicted RBP eCLIP32.74■■■□□ 2.83
TRIM47-204ENST00000587339 CADPSQ9ULU8 1353 aa32.68■■■□□ 2.82
TRIM47-204ENST00000587339 FAM9AQ8IZU1 332 aaPredicted RBP32.58■■■□□ 2.81
TRIM47-204ENST00000587339 SYNJ1O43426 1573 aa32.57■■■□□ 2.8
TRIM47-204ENST00000587339 PRDM2Q13029 1718 aa32.56■■■□□ 2.8
TRIM47-204ENST00000587339 LOC105371045A0A1W2PR82 267 aa32.51■■■□□ 2.79
TRIM47-204ENST00000587339 DNAJC5BQ9UF47 199 aa32.49■■■□□ 2.79
TRIM47-204ENST00000587339 TOP2BQ02880 1626 aa32.43■■■□□ 2.78
TRIM47-204ENST00000587339 NESP48681 1621 aa32.37■■■□□ 2.77
TRIM47-204ENST00000587339 BIVM-ERCC5R4GMW8 1640 aa32.37■■■□□ 2.77
TRIM47-204ENST00000587339 LAMC3Q9Y6N6 1575 aa32.36■■■□□ 2.77
TRIM47-204ENST00000587339 SOGA1O94964 1423 aa32.35■■■□□ 2.77
TRIM47-204ENST00000587339 CUX1P39880 1505 aa32.33■■■□□ 2.77
TRIM47-204ENST00000587339 FANCD2Q9BXW9 1451 aa32.32■■■□□ 2.76
TRIM47-204ENST00000587339 EEA1Q15075 1411 aa32.29■■■□□ 2.76
TRIM47-204ENST00000587339 RUSC2Q8N2Y8 1516 aa32.21■■■□□ 2.75
TRIM47-204ENST00000587339 PDS5BQ9NTI5 1447 aa32.14■■■□□ 2.74
TRIM47-204ENST00000587339 CSRNP3Q8WYN3 585 aa32.14■■■□□ 2.74
TRIM47-204ENST00000587339 EHMT2Q96KQ7 1210 aa32.14■■■□□ 2.74
TRIM47-204ENST00000587339 CEP164Q9UPV0 1460 aa32.11■■■□□ 2.73
TRIM47-204ENST00000587339 DNMBPQ6XZF7 1577 aa32.02■■■□□ 2.72
TRIM47-204ENST00000587339 FGD5Q6ZNL6 1462 aa31.98■■■□□ 2.71
TRIM47-204ENST00000587339 TOPBP1Q92547 1522 aa31.96■■■□□ 2.71
TRIM47-204ENST00000587339 KIF21AQ7Z4S6 1674 aa31.94■■■□□ 2.7
TRIM47-204ENST00000587339 KIF27Q86VH2 1401 aa31.91■■■□□ 2.7
TRIM47-204ENST00000587339 URB2Q14146 1524 aaKnown RBP31.9■■■□□ 2.7
TRIM47-204ENST00000587339 GOLGA3Q08378 1498 aa31.85■■■□□ 2.69
TRIM47-204ENST00000587339 KIF21BO75037 1637 aa31.84■■■□□ 2.69
TRIM47-204ENST00000587339 POLA1P09884 1462 aaPredicted RBP31.83■■■□□ 2.69
TRIM47-204ENST00000587339 CUX2O14529 1486 aa31.8■■■□□ 2.68
TRIM47-204ENST00000587339 UBTFP17480 764 aaKnown RBP31.77■■■□□ 2.68
TRIM47-204ENST00000587339 TNIKQ9UKE5 1360 aa31.76■■■□□ 2.67
TRIM47-204ENST00000587339 RAD54L2Q9Y4B4 1467 aa31.72■■■□□ 2.67
TRIM47-204ENST00000587339 MRC2Q9UBG0 1479 aa31.7■■■□□ 2.66
TRIM47-204ENST00000587339 ABCA10Q8WWZ4 1543 aa31.69■■■□□ 2.66
TRIM47-204ENST00000587339 PRXQ9BXM0 1461 aa31.68■■■□□ 2.66
TRIM47-204ENST00000587339 RAPGEF2Q9Y4G8 1499 aa31.68■■■□□ 2.66
TRIM47-204ENST00000587339 ERICH3Q5RHP9 1530 aa31.63■■■□□ 2.65
TRIM47-204ENST00000587339 ERCC6Q03468 1493 aa31.62■■■□□ 2.65
TRIM47-204ENST00000587339 CEP162Q5TB80 1403 aa31.61■■■□□ 2.65
TRIM47-204ENST00000587339 IGF1RP08069 1367 aa31.61■■■□□ 2.65
TRIM47-204ENST00000587339 WDR97A6NE52 1622 aa31.54■■■□□ 2.64
TRIM47-204ENST00000587339 WDR62O43379 1518 aa31.52■■■□□ 2.64
TRIM47-204ENST00000587339 TARBP1Q13395 1621 aaKnown RBP31.46■■■□□ 2.63
TRIM47-204ENST00000587339 CARMIL1Q5VZK9 1371 aa31.46■■■□□ 2.63
TRIM47-204ENST00000587339 TDRD9Q8NDG6 1382 aaKnown RBP31.44■■■□□ 2.62
TRIM47-204ENST00000587339 ABCA5Q8WWZ7 1642 aa31.41■■■□□ 2.62
TRIM47-204ENST00000587339 THOC2Q8NI27 1593 aaKnown RBP31.39■■■□□ 2.62
TRIM47-204ENST00000587339 GAPVD1Q14C86 1478 aa31.38■■■□□ 2.61
TRIM47-204ENST00000587339 CLIP1P30622 1438 aa31.36■■■□□ 2.61
TRIM47-204ENST00000587339 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
TRIM47-204ENST00000587339 CUL7Q14999 1698 aa31.32■■■□□ 2.6
TRIM47-204ENST00000587339 RANGAP1P46060 587 aaPredicted RBP31.25■■■□□ 2.59
TRIM47-204ENST00000587339 AQRO60306 1485 aaKnown RBP eCLIP31.21■■■□□ 2.597e-7■■■■■ 34.8
TRIM47-204ENST00000587339 ZNF608Q9ULD9 1512 aaPredicted RBP31.17■■■□□ 2.58
TRIM47-204ENST00000587339 PBRM1Q86U86 1689 aa31.15■■■□□ 2.58
TRIM47-204ENST00000587339 GRIN2BQ13224 1484 aa31.12■■■□□ 2.57
TRIM47-204ENST00000587339 PCGF6Q9BYE7 350 aa31.11■■■□□ 2.57
TRIM47-204ENST00000587339 VPS8Q8N3P4 1428 aa31.08■■■□□ 2.57
TRIM47-204ENST00000587339 TRIM26Q12899 539 aaPredicted RBP31.08■■■□□ 2.57
TRIM47-204ENST00000587339 EIF4G3O43432 1585 aaKnown RBP31.04■■■□□ 2.56
TRIM47-204ENST00000587339 FHAD1B1AJZ9 1412 aa31.04■■■□□ 2.56
TRIM47-204ENST00000587339 ARAP1Q96P48 1450 aa31.01■■■□□ 2.55
TRIM47-204ENST00000587339 ARHGAP35Q9NRY4 1499 aa31.01■■■□□ 2.55
TRIM47-204ENST00000587339 PPARGC1BQ86YN6 1023 aaKnown RBP31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms