Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
LIME1Q9H400 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.47■□□□□ 0.39
LIME1Q9H400 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIME1Q9H400 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
LIME1Q9H400 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.47■□□□□ 0.39
LIME1Q9H400 AL353708.3-201ENST00000610272 989 ntBASIC17.47■□□□□ 0.39
LIME1Q9H400 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.47■□□□□ 0.39
LIME1Q9H400 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.47■□□□□ 0.39
LIME1Q9H400 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.47■□□□□ 0.39
LIME1Q9H400 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIME1Q9H400 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 AC116050.2-201ENST00000612102 1779 ntBASIC17.46■□□□□ 0.39
LIME1Q9H400 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.46■□□□□ 0.39
LIME1Q9H400 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 ARMC10P1-201ENST00000313754 855 ntBASIC17.46■□□□□ 0.39
LIME1Q9H400 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.46■□□□□ 0.39
LIME1Q9H400 AC005829.2-201ENST00000571422 1056 ntBASIC17.46■□□□□ 0.39
LIME1Q9H400 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.46■□□□□ 0.39
LIME1Q9H400 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LIME1Q9H400 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LIME1Q9H400 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIME1Q9H400 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIME1Q9H400 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
LIME1Q9H400 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIME1Q9H400 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIME1Q9H400 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
LIME1Q9H400 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIME1Q9H400 PCDHAC2-203ENST00000615316 3011 ntBASIC17.45■□□□□ 0.38
LIME1Q9H400 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LIME1Q9H400 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
LIME1Q9H400 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LIME1Q9H400 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIME1Q9H400 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LIME1Q9H400 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
LIME1Q9H400 RARRES2P10-201ENST00000564312 460 ntBASIC17.45■□□□□ 0.38
LIME1Q9H400 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.45■□□□□ 0.38
LIME1Q9H400 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIME1Q9H400 CD177P1-201ENST00000606252 935 ntBASIC17.45■□□□□ 0.38
LIME1Q9H400 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.45■□□□□ 0.38
LIME1Q9H400 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.45■□□□□ 0.38
LIME1Q9H400 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.45■□□□□ 0.38
LIME1Q9H400 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIME1Q9H400 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.45■□□□□ 0.38
LIME1Q9H400 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIME1Q9H400 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIME1Q9H400 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.44■□□□□ 0.38
LIME1Q9H400 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
LIME1Q9H400 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.44■□□□□ 0.38
LIME1Q9H400 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms