Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.165e-9■■■□□ 15.7
YBX3P16989 NADK-204ENST00000378625 3653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.515e-9■■■□□ 15.7
YBX3P16989 ELOF1-209ENST00000593077 585 ntTSL 49.67□□□□□ -0.869e-8■■■□□ 15.7
YBX3P16989 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.73■□□□□ 0.112e-6■■■□□ 15.7
YBX3P16989 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.89□□□□□ -0.032e-6■■■□□ 15.7
YBX3P16989 NFE2L2-208ENST00000449627 909 ntTSL 47.55□□□□□ -1.22e-6■■■□□ 15.7
YBX3P16989 NFE2L2-209ENST00000458603 455 ntTSL 36.53□□□□□ -1.362e-6■■■□□ 15.7
YBX3P16989 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.372e-6■■■□□ 15.7
YBX3P16989 DOCK8-209ENST00000469391 6386 ntTSL 1 (best) BASIC9.16□□□□□ -0.945e-7■■■□□ 15.7
YBX3P16989 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC8.89□□□□□ -0.995e-7■■■□□ 15.7
YBX3P16989 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.082e-6■■■□□ 15.7
YBX3P16989 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.15e-7■■■□□ 15.7
YBX3P16989 DOCK8-216ENST00000495184 9277 ntTSL 1 (best)7.86□□□□□ -1.155e-7■■■□□ 15.7
YBX3P16989 PDS5A-210ENST00000513798 494 ntTSL 34.93□□□□□ -1.622e-8■■■□□ 15.7
YBX3P16989 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.926e-9■■■□□ 15.7
YBX3P16989 STUB1-209ENST00000567173 743 ntTSL 333.09■■■□□ 2.896e-9■■■□□ 15.7
YBX3P16989 STUB1-202ENST00000563505 894 ntTSL 232.57■■■□□ 2.86e-9■■■□□ 15.7
YBX3P16989 STUB1-211ENST00000569248 1853 ntTSL 532.31■■■□□ 2.766e-9■■■□□ 15.7
YBX3P16989 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.75■■■□□ 2.676e-9■■■□□ 15.7
YBX3P16989 GPSM2-203ENST00000435475 992 ntTSL 328.51■■■□□ 2.156e-9■■■□□ 15.7
YBX3P16989 STUB1-210ENST00000567790 428 ntTSL 321.06■□□□□ 0.966e-9■■■□□ 15.7
YBX3P16989 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.82■□□□□ 0.66e-9■■■□□ 15.7
YBX3P16989 DOCK2-201ENST00000256935 6097 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.521e-6■■■□□ 15.7
YBX3P16989 DOCK2-214ENST00000523351 3777 ntTSL 59.74□□□□□ -0.851e-6■■■□□ 15.7
YBX3P16989 GPSM2-206ENST00000446797 571 ntTSL 49.4□□□□□ -0.96e-9■■■□□ 15.7
YBX3P16989 DOCK2-216ENST00000524185 5656 ntTSL 1 (best)8.27□□□□□ -1.091e-6■■■□□ 15.7
YBX3P16989 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC7.85□□□□□ -1.151e-6■■■□□ 15.7
YBX3P16989 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.039e-9■■■□□ 15.7
YBX3P16989 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.839e-9■■■□□ 15.7
YBX3P16989 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.689e-9■■■□□ 15.7
YBX3P16989 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.519e-9■■■□□ 15.7
YBX3P16989 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.329e-9■■■□□ 15.7
YBX3P16989 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.263e-7■■■□□ 15.7
YBX3P16989 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.273e-7■■■□□ 15.7
YBX3P16989 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.283e-7■■■□□ 15.7
YBX3P16989 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.443e-7■■■□□ 15.7
YBX3P16989 KPNB1-211ENST00000582097 2347 ntTSL 29.9□□□□□ -0.829e-8■■■□□ 15.7
YBX3P16989 NCL-205ENST00000453992 964 ntTSL 424.4■■□□□ 1.56e-16■■■□□ 15.7
YBX3P16989 NCL-206ENST00000454824 606 ntTSL 38.76□□□□□ -1.016e-16■■■□□ 15.7
YBX3P16989 NCL-203ENST00000417652 568 ntTSL 48.76□□□□□ -1.016e-16■■■□□ 15.7
YBX3P16989 NCL-204ENST00000436894 562 ntTSL 46.21□□□□□ -1.426e-16■■■□□ 15.7
YBX3P16989 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.25□□□□□ -1.412e-6■■■□□ 15.7
YBX3P16989 SEC24D-206ENST00000505134 3915 ntTSL 24.92□□□□□ -1.622e-6■■■□□ 15.7
YBX3P16989 DHRS11-214ENST00000617959 976 ntTSL 215.17■□□□□ 0.026e-11■■■□□ 15.7
YBX3P16989 DHRS11-209ENST00000610443 4505 nt11.99□□□□□ -0.496e-11■■■□□ 15.7
YBX3P16989 DHRS11-216ENST00000621871 883 ntTSL 310.1□□□□□ -0.796e-11■■■□□ 15.7
YBX3P16989 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.26e-12■■■□□ 15.6
YBX3P16989 PTPN7-217ENST00000495688 2689 ntTSL 1 (best)13.23□□□□□ -0.293e-6■■■□□ 15.6
YBX3P16989 PTPN7-202ENST00000367279 3265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.43e-6■■■□□ 15.6
YBX3P16989 PTPN7-201ENST00000309017 3765 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.613e-6■■■□□ 15.6
YBX3P16989 FADS1-202ENST00000421879 583 ntTSL 320.41■□□□□ 0.863e-13■■■□□ 15.6
YBX3P16989 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.912e-6■■■□□ 15.6
YBX3P16989 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.092e-6■■■□□ 15.6
YBX3P16989 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.252e-6■■■□□ 15.6
YBX3P16989 NAMPT-201ENST00000222553 4582 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.426e-7■■■□□ 15.6
YBX3P16989 PRKCB-207ENST00000486868 467 ntTSL 313.1□□□□□ -0.312e-9■■■□□ 15.6
YBX3P16989 MACF1-206ENST00000422234 477 ntTSL 59.4□□□□□ -0.94e-8■■■□□ 15.6
YBX3P16989 MACF1-210ENST00000462496 526 ntTSL 35.36□□□□□ -1.554e-8■■■□□ 15.6
YBX3P16989 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.954e-7■■■□□ 15.6
YBX3P16989 INTS7-201ENST00000366992 3380 ntTSL 2 BASIC8.85□□□□□ -0.992e-6■■■□□ 15.6
YBX3P16989 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.022e-6■■■□□ 15.6
YBX3P16989 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC7.96□□□□□ -1.142e-6■■■□□ 15.6
YBX3P16989 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC7.92□□□□□ -1.142e-6■■■□□ 15.6
YBX3P16989 INTS7-208ENST00000469606 4447 ntTSL 1 (best)7.41□□□□□ -1.222e-6■■■□□ 15.6
YBX3P16989 LCMT1-207ENST00000572869 638 ntTSL 313.31□□□□□ -0.282e-9■■■□□ 15.6
YBX3P16989 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.745e-25■■■□□ 15.6
YBX3P16989 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.555e-25■■■□□ 15.6
YBX3P16989 ADSL-219ENST00000636433 1444 ntTSL 513.73□□□□□ -0.211e-6■■■□□ 15.6
YBX3P16989 PCSK9-201ENST00000302118 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.413e-11■■■□□ 15.6
YBX3P16989 PCSK9-202ENST00000490692 3891 ntTSL 211.46□□□□□ -0.573e-11■■■□□ 15.6
YBX3P16989 CAST-218ENST00000507487 396 ntTSL 514.57□□□□□ -0.081e-10■■■□□ 15.6
YBX3P16989 CAST-240ENST00000514055 559 ntTSL 512.49□□□□□ -0.411e-10■■■□□ 15.6
YBX3P16989 CAST-217ENST00000506811 582 ntTSL 512.49□□□□□ -0.411e-10■■■□□ 15.6
YBX3P16989 EIF4B-210ENST00000550704 1476 ntTSL 518.73■□□□□ 0.599e-8■■■□□ 15.6
YBX3P16989 EIF4B-203ENST00000420463 1936 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.129e-8■■■□□ 15.6
YBX3P16989 EIF4B-202ENST00000416762 1985 ntTSL 2 BASIC12.92□□□□□ -0.349e-8■■■□□ 15.6
YBX3P16989 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.989e-8■■■□□ 15.6
YBX3P16989 RFC2-208ENST00000485545 847 ntTSL 39.16□□□□□ -0.944e-7■■■□□ 15.6
YBX3P16989 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC28.7■■■□□ 2.181e-8■■■□□ 15.6
YBX3P16989 HPS1-203ENST00000359632 978 ntTSL 318.63■□□□□ 0.571e-9■■■□□ 15.6
YBX3P16989 SLC38A5-201ENST00000413668 741 ntTSL 216.83■□□□□ 0.282e-11■■■□□ 15.6
YBX3P16989 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.798e-9■■■□□ 15.6
YBX3P16989 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.626e-7■■■□□ 15.6
YBX3P16989 C1orf198-203ENST00000470540 3819 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.276e-7■■■□□ 15.6
YBX3P16989 C1orf198-202ENST00000427697 3666 ntAPPRIS ALT2 TSL 2 BASIC9.64□□□□□ -0.876e-7■■■□□ 15.6
YBX3P16989 PTRH2-201ENST00000393038 901 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.052e-12■■■□□ 15.6
YBX3P16989 PTRH2-202ENST00000409433 2246 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.752e-12■■■□□ 15.6
YBX3P16989 PTRH2-205ENST00000587935 409 ntTSL 37.48□□□□□ -1.212e-12■■■□□ 15.6
YBX3P16989 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.78□□□□□ -1.642e-12■■■□□ 15.6
YBX3P16989 AL049779.1-202ENST00000553582 498 ntTSL 26.62□□□□□ -1.354e-6■■■□□ 15.6
YBX3P16989 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC6.07□□□□□ -1.444e-6■■■□□ 15.6
YBX3P16989 AL049779.1-203ENST00000554493 364 ntTSL 25.78□□□□□ -1.484e-6■■■□□ 15.6
YBX3P16989 AL049779.1-204ENST00000557564 274 ntAPPRIS P1 TSL 22.08□□□□□ -2.084e-6■■■□□ 15.6
YBX3P16989 GYS1-202ENST00000323798 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.437e-8■■■□□ 15.6
YBX3P16989 GYS1-201ENST00000263276 3378 ntTSL 1 (best) BASIC11.54□□□□□ -0.567e-8■■■□□ 15.6
YBX3P16989 PIK3CB-204ENST00000462898 4747 ntTSL 517.47■□□□□ 0.394e-6■■■□□ 15.6
YBX3P16989 PIK3CB-207ENST00000473435 904 ntTSL 59.41□□□□□ -0.94e-6■■■□□ 15.6
YBX3P16989 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.134e-6■■■□□ 15.6
YBX3P16989 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.294e-6■■■□□ 15.6
YBX3P16989 PIK3CB-213ENST00000493568 2347 ntTSL 26□□□□□ -1.454e-6■■■□□ 15.6
Retrieved 100 of 29,075 protein–RNA pairs in 298.7 ms