RNA–Protein interactions for RNA: ENST00000453992.5

NCL-205, Transcript of nucleolin, humanhuman

TSL 4

Gene NCL, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-205ENST00000453992 NISCHQ9Y2I1 1504 aa46.44■■■■■ 5.02
NCL-205ENST00000453992 CCDC180Q9P1Z9 1646 aa41.26■■■■■ 4.19
NCL-205ENST00000453992 ABCC9O60706 1549 aa39.86■■■■□ 3.97
NCL-205ENST00000453992 ZCCHC6Q5VYS8 1495 aaKnown RBP38.79■■■■□ 3.8
NCL-205ENST00000453992 NACADO15069 1562 aa38.64■■■■□ 3.78
NCL-205ENST00000453992 RB1CC1Q8TDY2 1594 aa38.59■■■■□ 3.77
NCL-205ENST00000453992 MYO15BQ96JP2 1530 aa38.57■■■■□ 3.76
NCL-205ENST00000453992 DCAF1Q9Y4B6 1507 aa38.52■■■■□ 3.76
NCL-205ENST00000453992 DCAF8L2P0C7V8 631 aa38.42■■■■□ 3.74
NCL-205ENST00000453992 UNC13AQ9UPW8 1703 aa37.76■■■■□ 3.64
NCL-205ENST00000453992 SCRIBQ14160 1630 aa37.54■■■■□ 3.6
NCL-205ENST00000453992 BICRAQ9NZM4 1560 aa37.38■■■■□ 3.57
NCL-205ENST00000453992 PABPN1Q86U42 306 aaKnown RBP eCLIP37.31■■■■□ 3.56
NCL-205ENST00000453992 SHROOM4Q9ULL8 1493 aa37.13■■■■□ 3.54
NCL-205ENST00000453992 DNAJC5BQ9UF47 199 aa36.94■■■■□ 3.5
NCL-205ENST00000453992 EIF4G1Q04637 1599 aaKnown RBP36.37■■■■□ 3.41
NCL-205ENST00000453992 CC2D2AQ9P2K1 1620 aa36.12■■■■□ 3.37
NCL-205ENST00000453992 CECR2Q9BXF3 1484 aa36.05■■■■□ 3.36
NCL-205ENST00000453992 BAZ1AQ9NRL2 1556 aaPredicted RBP36.01■■■■□ 3.35
NCL-205ENST00000453992 SMARCA4P51532 1647 aa35.99■■■■□ 3.35
NCL-205ENST00000453992 MROH2BQ7Z745 1585 aa35.75■■■■□ 3.31
NCL-205ENST00000453992 SMARCA2P51531 1590 aa35.69■■■■□ 3.3
NCL-205ENST00000453992 PEG3Q9GZU2 1588 aa35.68■■■■□ 3.3
NCL-205ENST00000453992 ATAD2BQ9ULI0 1458 aa35.65■■■■□ 3.3
NCL-205ENST00000453992 NCAPD3P42695 1498 aa35.6■■■■□ 3.29
NCL-205ENST00000453992 HMGXB3Q12766 1538 aa35.52■■■■□ 3.28
NCL-205ENST00000453992 RSF1Q96T23 1441 aaPredicted RBP35.46■■■■□ 3.27
NCL-205ENST00000453992 WIZO95785 1651 aa35.41■■■■□ 3.26
NCL-205ENST00000453992 BAZ1BQ9UIG0 1483 aaKnown RBP35.39■■■■□ 3.26
NCL-205ENST00000453992 TOP2AP11388 1531 aaKnown RBP35.11■■■■□ 3.21
NCL-205ENST00000453992 SUPT5HO00267 1087 aaKnown RBP34.68■■■■□ 3.14
NCL-205ENST00000453992 LAMC3Q9Y6N6 1575 aa34.66■■■■□ 3.14
NCL-205ENST00000453992 CCDC88BA6NC98 1476 aa34.61■■■■□ 3.13
NCL-205ENST00000453992 NESP48681 1621 aa34.56■■■■□ 3.12
NCL-205ENST00000453992 CADPSQ9ULU8 1353 aa34.54■■■■□ 3.12
NCL-205ENST00000453992 CFTRP13569 1480 aa34.45■■■■□ 3.1
NCL-205ENST00000453992 PRDM2Q13029 1718 aa34.37■■■■□ 3.09
NCL-205ENST00000453992 PDS5BQ9NTI5 1447 aa34.35■■■■□ 3.09
NCL-205ENST00000453992 ERCC6Q03468 1493 aa34.33■■■■□ 3.09
NCL-205ENST00000453992 KIF21AQ7Z4S6 1674 aa34.28■■■■□ 3.08
NCL-205ENST00000453992 FANCD2Q9BXW9 1451 aa34.16■■■■□ 3.06
NCL-205ENST00000453992 CEP164Q9UPV0 1460 aa34.11■■■■□ 3.05
NCL-205ENST00000453992 THOC2Q8NI27 1593 aaKnown RBP34.09■■■■□ 3.05
NCL-205ENST00000453992 MRC2Q9UBG0 1479 aa34■■■■□ 3.03
NCL-205ENST00000453992 CUX2O14529 1486 aa33.96■■■■□ 3.03
NCL-205ENST00000453992 WDR62O43379 1518 aa33.91■■■■□ 3.02
NCL-205ENST00000453992 URB2Q14146 1524 aaKnown RBP33.79■■■■□ 3
NCL-205ENST00000453992 ABCC8Q09428 1581 aa33.73■■■□□ 2.99
NCL-205ENST00000453992 DNMBPQ6XZF7 1577 aa33.71■■■□□ 2.99
NCL-205ENST00000453992 TOPBP1Q92547 1522 aa33.67■■■□□ 2.98
NCL-205ENST00000453992 CUX1P39880 1505 aa33.53■■■□□ 2.96
NCL-205ENST00000453992 WRNQ14191 1432 aaPredicted RBP eCLIP33.45■■■□□ 2.94
NCL-205ENST00000453992 BIVM-ERCC5R4GMW8 1640 aa33.42■■■□□ 2.94
NCL-205ENST00000453992 POLA1P09884 1462 aaPredicted RBP33.41■■■□□ 2.94
NCL-205ENST00000453992 TOP2BQ02880 1626 aa33.4■■■□□ 2.94
NCL-205ENST00000453992 IFT140Q96RY7 1462 aa33.38■■■□□ 2.93
NCL-205ENST00000453992 SYNJ1O43426 1573 aa33.37■■■□□ 2.93
NCL-205ENST00000453992 FGD5Q6ZNL6 1462 aa33.37■■■□□ 2.93
NCL-205ENST00000453992 DNAJC5Q9H3Z4 198 aa33.32■■■□□ 2.92
NCL-205ENST00000453992 TARBP1Q13395 1621 aaKnown RBP33.31■■■□□ 2.92
NCL-205ENST00000453992 SOGA1O94964 1423 aa33.22■■■□□ 2.91
NCL-205ENST00000453992 RAD54L2Q9Y4B4 1467 aa33.19■■■□□ 2.9
NCL-205ENST00000453992 WDR97A6NE52 1622 aa33.18■■■□□ 2.9
NCL-205ENST00000453992 ZNF608Q9ULD9 1512 aaPredicted RBP33.14■■■□□ 2.9
NCL-205ENST00000453992 EIF4G3O43432 1585 aaKnown RBP33.13■■■□□ 2.89
NCL-205ENST00000453992 ABCA10Q8WWZ4 1543 aa33.09■■■□□ 2.89
NCL-205ENST00000453992 ABCA5Q8WWZ7 1642 aa32.98■■■□□ 2.87
NCL-205ENST00000453992 AQRO60306 1485 aaKnown RBP eCLIP32.98■■■□□ 2.871e-36■■■■■ 35.3
NCL-205ENST00000453992 TDRD9Q8NDG6 1382 aaKnown RBP32.96■■■□□ 2.87
NCL-205ENST00000453992 PBRM1Q86U86 1689 aa32.89■■■□□ 2.86
NCL-205ENST00000453992 GAPVD1Q14C86 1478 aa32.88■■■□□ 2.85
NCL-205ENST00000453992 GRIN2BQ13224 1484 aa32.85■■■□□ 2.85
NCL-205ENST00000453992 TRIM41Q8WV44 630 aa32.8■■■□□ 2.84
NCL-205ENST00000453992 MAGI1Q96QZ7 1491 aaPredicted RBP32.76■■■□□ 2.84
NCL-205ENST00000453992 SNAPC4Q5SXM2 1469 aa32.74■■■□□ 2.83
NCL-205ENST00000453992 ERICH3Q5RHP9 1530 aa32.73■■■□□ 2.83
NCL-205ENST00000453992 KIF27Q86VH2 1401 aa32.73■■■□□ 2.83
NCL-205ENST00000453992 CHD1O14646 1710 aa32.65■■■□□ 2.82
NCL-205ENST00000453992 OSCARQ8IYS5 282 aa32.64■■■□□ 2.82
NCL-205ENST00000453992 ADAMTS12P58397 1594 aa32.62■■■□□ 2.81
NCL-205ENST00000453992 CHIC1Q5VXU3 224 aa32.62■■■□□ 2.81
NCL-205ENST00000453992 SYNJ2O15056 1496 aa32.61■■■□□ 2.81
NCL-205ENST00000453992 CUL7Q14999 1698 aa32.55■■■□□ 2.8
NCL-205ENST00000453992 FHAD1B1AJZ9 1412 aa32.53■■■□□ 2.8
NCL-205ENST00000453992 IGF1RP08069 1367 aa32.49■■■□□ 2.79
NCL-205ENST00000453992 CHMP7Q8WUX9 453 aaPredicted RBP32.46■■■□□ 2.79
NCL-205ENST00000453992 RUSC2Q8N2Y8 1516 aa32.46■■■□□ 2.79
NCL-205ENST00000453992 FBLN2P98095 1184 aa32.44■■■□□ 2.78
NCL-205ENST00000453992 GRIN2AQ12879 1464 aa32.43■■■□□ 2.78
NCL-205ENST00000453992 EEA1Q15075 1411 aa32.38■■■□□ 2.77
NCL-205ENST00000453992 CARMIL1Q5VZK9 1371 aa32.32■■■□□ 2.76
NCL-205ENST00000453992 CLASP1Q7Z460 1538 aa32.29■■■□□ 2.76
NCL-205ENST00000453992 NUP160Q12769 1436 aa32.28■■■□□ 2.76
NCL-205ENST00000453992 CEP170Q5SW79 1584 aa32.27■■■□□ 2.76
NCL-205ENST00000453992 RAPGEF2Q9Y4G8 1499 aa32.21■■■□□ 2.75
NCL-205ENST00000453992 PRXQ9BXM0 1461 aa32.19■■■□□ 2.74
NCL-205ENST00000453992 CSRNP3Q8WYN3 585 aa32.16■■■□□ 2.74
NCL-205ENST00000453992 RIMBP3CA6NJZ7 1639 aa32.08■■■□□ 2.73
NCL-205ENST00000453992 RIMBP3BA6NNM3 1639 aa32.08■■■□□ 2.73
NCL-205ENST00000453992 RIMBP3Q9UFD9 1639 aa32.08■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms