RNA–Protein interactions for RNA: ENST00000302118.5

PCSK9-201, Transcript of proprotein convertase subtilisin/kexin type 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCSK9, Length 3,637 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCSK9-201ENST00000302118 NISCHQ9Y2I1 1504 aa24.02■■□□□ 1.44
PCSK9-201ENST00000302118 SHROOM4Q9ULL8 1493 aa21.7■■□□□ 1.06
PCSK9-201ENST00000302118 DCAF8L2P0C7V8 631 aa21.59■■□□□ 1.05
PCSK9-201ENST00000302118 SUPT5HO00267 1087 aaKnown RBP21.46■■□□□ 1.03
PCSK9-201ENST00000302118 EHMT2Q96KQ7 1210 aa20.33■□□□□ 0.84
PCSK9-201ENST00000302118 PCGF6Q9BYE7 350 aa20.22■□□□□ 0.83
PCSK9-201ENST00000302118 CHIC1Q5VXU3 224 aa20.2■□□□□ 0.82
PCSK9-201ENST00000302118 CCDC180Q9P1Z9 1646 aa20.16■□□□□ 0.82
PCSK9-201ENST00000302118 ZCCHC6Q5VYS8 1495 aaKnown RBP20.15■□□□□ 0.82
PCSK9-201ENST00000302118 LOC105371045A0A1W2PR82 267 aa20.07■□□□□ 0.8
PCSK9-201ENST00000302118 FAM9AQ8IZU1 332 aaPredicted RBP20.04■□□□□ 0.8
PCSK9-201ENST00000302118 MYO15BQ96JP2 1530 aa19.84■□□□□ 0.77
PCSK9-201ENST00000302118 PPARGC1BQ86YN6 1023 aaKnown RBP19.81■□□□□ 0.76
PCSK9-201ENST00000302118 ABCC9O60706 1549 aa19.81■□□□□ 0.76
PCSK9-201ENST00000302118 HRCP23327 699 aa19.7■□□□□ 0.74
PCSK9-201ENST00000302118 TRIM41Q8WV44 630 aa19.66■□□□□ 0.74
PCSK9-201ENST00000302118 TTBK1Q5TCY1 1321 aaPredicted RBP19.59■□□□□ 0.73
PCSK9-201ENST00000302118 SCRIBQ14160 1630 aa19.46■□□□□ 0.71
PCSK9-201ENST00000302118 DCAF1Q9Y4B6 1507 aa19.33■□□□□ 0.68
PCSK9-201ENST00000302118 TRIM26Q12899 539 aaPredicted RBP19.32■□□□□ 0.68
PCSK9-201ENST00000302118 PABPN1Q86U42 306 aaKnown RBP eCLIP19.18■□□□□ 0.66
PCSK9-201ENST00000302118 RANGAP1P46060 587 aaPredicted RBP19.14■□□□□ 0.66
PCSK9-201ENST00000302118 RSF1Q96T23 1441 aaPredicted RBP19.1■□□□□ 0.65
PCSK9-201ENST00000302118 CECR2Q9BXF3 1484 aa19.02■□□□□ 0.63
PCSK9-201ENST00000302118 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
PCSK9-201ENST00000302118 CCER1Q8TC90 406 aaPredicted RBP18.99■□□□□ 0.63
PCSK9-201ENST00000302118 UBTFP17480 764 aaKnown RBP18.97■□□□□ 0.63
PCSK9-201ENST00000302118 NACADO15069 1562 aa18.95■□□□□ 0.62
PCSK9-201ENST00000302118 RB1CC1Q8TDY2 1594 aa18.84■□□□□ 0.61
PCSK9-201ENST00000302118 ZEB1P37275 1124 aaPredicted RBP18.82■□□□□ 0.6
PCSK9-201ENST00000302118 PELP1Q8IZL8 1130 aaKnown RBP18.8■□□□□ 0.6
PCSK9-201ENST00000302118 MROH2BQ7Z745 1585 aa18.8■□□□□ 0.6
PCSK9-201ENST00000302118 HNRNPUL2Q1KMD3 747 aaKnown RBP18.67■□□□□ 0.58
PCSK9-201ENST00000302118 WIZO95785 1651 aa18.64■□□□□ 0.58
PCSK9-201ENST00000302118 APLP2Q06481 763 aa18.59■□□□□ 0.57
PCSK9-201ENST00000302118 YTHDC1Q96MU7 727 aaKnown RBP18.57■□□□□ 0.56
PCSK9-201ENST00000302118 CSRNP3Q8WYN3 585 aa18.49■□□□□ 0.55
PCSK9-201ENST00000302118 BAZ1AQ9NRL2 1556 aaPredicted RBP18.46■□□□□ 0.55
PCSK9-201ENST00000302118 ABCC8Q09428 1581 aa18.44■□□□□ 0.54
PCSK9-201ENST00000302118 DIEXFQ68CQ4 756 aaKnown RBP18.42■□□□□ 0.54
PCSK9-201ENST00000302118 SOGA1O94964 1423 aa18.41■□□□□ 0.54
PCSK9-201ENST00000302118 ITGAEP38570 1179 aa18.4■□□□□ 0.54
PCSK9-201ENST00000302118 CCDC88BA6NC98 1476 aa18.38■□□□□ 0.53
PCSK9-201ENST00000302118 ATP1B4Q9UN42 357 aaPredicted RBP18.34■□□□□ 0.53
PCSK9-201ENST00000302118 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
PCSK9-201ENST00000302118 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
PCSK9-201ENST00000302118 CEP162Q5TB80 1403 aa18.28■□□□□ 0.52
PCSK9-201ENST00000302118 RUSC2Q8N2Y8 1516 aa18.27■□□□□ 0.51
PCSK9-201ENST00000302118 UNC13AQ9UPW8 1703 aa18.27■□□□□ 0.51
PCSK9-201ENST00000302118 CENPBP07199 599 aaPredicted RBP18.23■□□□□ 0.51
PCSK9-201ENST00000302118 NEUROD1Q13562 356 aa18.23■□□□□ 0.51
PCSK9-201ENST00000302118 MYT1Q01538 1121 aa18.2■□□□□ 0.5
PCSK9-201ENST00000302118 GTF3C3Q9Y5Q9 886 aa18.19■□□□□ 0.5
PCSK9-201ENST00000302118 BICRAQ9NZM4 1560 aa18.19■□□□□ 0.5
PCSK9-201ENST00000302118 TOP2AP11388 1531 aaKnown RBP18.19■□□□□ 0.5
PCSK9-201ENST00000302118 ACIN1Q9UKV3 1341 aaKnown RBP18.11■□□□□ 0.49
PCSK9-201ENST00000302118 SMARCA2P51531 1590 aa18.11■□□□□ 0.49
PCSK9-201ENST00000302118 BAZ1BQ9UIG0 1483 aaKnown RBP18.11■□□□□ 0.49
PCSK9-201ENST00000302118 WRNQ14191 1432 aaPredicted RBP eCLIP18.11■□□□□ 0.49
PCSK9-201ENST00000302118 ZNF316A6NFI3 1004 aaPredicted RBP18.09■□□□□ 0.49
PCSK9-201ENST00000302118 TNIKQ9UKE5 1360 aa18.07■□□□□ 0.48
PCSK9-201ENST00000302118 P3H3Q8IVL6 736 aa18.06■□□□□ 0.48
PCSK9-201ENST00000302118 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
PCSK9-201ENST00000302118 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
PCSK9-201ENST00000302118 CLIP1P30622 1438 aa18.03■□□□□ 0.48
PCSK9-201ENST00000302118 MIER1Q8N108 512 aa17.99■□□□□ 0.47
PCSK9-201ENST00000302118 GOLGA3Q08378 1498 aa17.97■□□□□ 0.47
PCSK9-201ENST00000302118 FAM50AQ14320 339 aaKnown RBP17.91■□□□□ 0.46
PCSK9-201ENST00000302118 KANK4Q5T7N3 995 aaPredicted RBP17.87■□□□□ 0.45
PCSK9-201ENST00000302118 EEA1Q15075 1411 aa17.85■□□□□ 0.45
PCSK9-201ENST00000302118 RAPGEF2Q9Y4G8 1499 aa17.84■□□□□ 0.45
PCSK9-201ENST00000302118 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
PCSK9-201ENST00000302118 HIRIP3Q9BW71 556 aaPredicted RBP17.77■□□□□ 0.44
PCSK9-201ENST00000302118 ARID3CA6NKF2 412 aa17.76■□□□□ 0.43
PCSK9-201ENST00000302118 SYNJ1O43426 1573 aa17.74■□□□□ 0.43
PCSK9-201ENST00000302118 VPS8Q8N3P4 1428 aa17.71■□□□□ 0.42
PCSK9-201ENST00000302118 PEG3Q9GZU2 1588 aa17.67■□□□□ 0.42
PCSK9-201ENST00000302118 BCANQ96GW7 911 aa17.66■□□□□ 0.42
PCSK9-201ENST00000302118 CNGB1Q14028 1251 aaPredicted RBP17.66■□□□□ 0.42
PCSK9-201ENST00000302118 NCAPD3P42695 1498 aa17.64■□□□□ 0.41
PCSK9-201ENST00000302118 DNAJC5BQ9UF47 199 aa17.64■□□□□ 0.41
PCSK9-201ENST00000302118 SIN3AQ96ST3 1273 aa17.61■□□□□ 0.41
PCSK9-201ENST00000302118 DDX10Q13206 875 aaKnown RBP17.59■□□□□ 0.41
PCSK9-201ENST00000302118 KIF27Q86VH2 1401 aa17.57■□□□□ 0.4
PCSK9-201ENST00000302118 CUX2O14529 1486 aa17.52■□□□□ 0.39
PCSK9-201ENST00000302118 KCNH8Q96L42 1107 aa17.52■□□□□ 0.39
PCSK9-201ENST00000302118 CADPSQ9ULU8 1353 aa17.51■□□□□ 0.39
PCSK9-201ENST00000302118 KIF21BO75037 1637 aa17.49■□□□□ 0.39
PCSK9-201ENST00000302118 CHIC2Q9UKJ5 165 aa17.48■□□□□ 0.39
PCSK9-201ENST00000302118 CUX1P39880 1505 aa17.46■□□□□ 0.39
PCSK9-201ENST00000302118 CCNB3Q8WWL7 1395 aa17.46■□□□□ 0.39
PCSK9-201ENST00000302118 CC2D2AQ9P2K1 1620 aa17.46■□□□□ 0.39
PCSK9-201ENST00000302118 DHX57Q6P158 1386 aaKnown RBP17.46■□□□□ 0.38
PCSK9-201ENST00000302118 CFTRP13569 1480 aa17.45■□□□□ 0.38
PCSK9-201ENST00000302118 TRIM52Q96A61 297 aa17.45■□□□□ 0.38
PCSK9-201ENST00000302118 NESP48681 1621 aa17.44■□□□□ 0.38
PCSK9-201ENST00000302118 HMGXB3Q12766 1538 aa17.44■□□□□ 0.38
PCSK9-201ENST00000302118 CARMIL1Q5VZK9 1371 aa17.43■□□□□ 0.38
PCSK9-201ENST00000302118 ARAP1Q96P48 1450 aa17.43■□□□□ 0.38
PCSK9-201ENST00000302118 POLR3GLQ9BT43 218 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms