RNA–Protein interactions for RNA: ENST00000309017.7

PTPN7-201, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPN7, Length 3,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-201ENST00000309017 NISCHQ9Y2I1 1504 aa21.4■■□□□ 1.02
PTPN7-201ENST00000309017 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
PTPN7-201ENST00000309017 SUPT5HO00267 1087 aaKnown RBP18.99■□□□□ 0.63
PTPN7-201ENST00000309017 HRCP23327 699 aa18.51■□□□□ 0.55
PTPN7-201ENST00000309017 PCGF6Q9BYE7 350 aa18.45■□□□□ 0.54
PTPN7-201ENST00000309017 DCAF8L2P0C7V8 631 aa18.43■□□□□ 0.54
PTPN7-201ENST00000309017 CHIC1Q5VXU3 224 aa18.35■□□□□ 0.53
PTPN7-201ENST00000309017 MYO15BQ96JP2 1530 aa18.24■□□□□ 0.51
PTPN7-201ENST00000309017 PPARGC1BQ86YN6 1023 aaKnown RBP18.22■□□□□ 0.51
PTPN7-201ENST00000309017 ZCCHC6Q5VYS8 1495 aaKnown RBP18.11■□□□□ 0.49
PTPN7-201ENST00000309017 LOC105371045A0A1W2PR82 267 aa18■□□□□ 0.47
PTPN7-201ENST00000309017 TRIM26Q12899 539 aaPredicted RBP17.82■□□□□ 0.44
PTPN7-201ENST00000309017 DCAF1Q9Y4B6 1507 aa17.8■□□□□ 0.44
PTPN7-201ENST00000309017 CCDC180Q9P1Z9 1646 aa17.77■□□□□ 0.44
PTPN7-201ENST00000309017 EHMT2Q96KQ7 1210 aa17.64■□□□□ 0.41
PTPN7-201ENST00000309017 ZEB1P37275 1124 aaPredicted RBP17.62■□□□□ 0.41
PTPN7-201ENST00000309017 FAM9AQ8IZU1 332 aaPredicted RBP17.62■□□□□ 0.41
PTPN7-201ENST00000309017 TRIM41Q8WV44 630 aa17.54■□□□□ 0.4
PTPN7-201ENST00000309017 PELP1Q8IZL8 1130 aaKnown RBP17.51■□□□□ 0.39
PTPN7-201ENST00000309017 SCAF1Q9H7N4 1312 aaKnown RBP17.34■□□□□ 0.37
PTPN7-201ENST00000309017 CCER1Q8TC90 406 aaPredicted RBP17.23■□□□□ 0.35
PTPN7-201ENST00000309017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.19■□□□□ 0.34
PTPN7-201ENST00000309017 RSF1Q96T23 1441 aaPredicted RBP17.18■□□□□ 0.34
PTPN7-201ENST00000309017 TTBK1Q5TCY1 1321 aaPredicted RBP17.15■□□□□ 0.34
PTPN7-201ENST00000309017 ABCC9O60706 1549 aa17.15■□□□□ 0.34
PTPN7-201ENST00000309017 SCRIBQ14160 1630 aa17.11■□□□□ 0.33
PTPN7-201ENST00000309017 ACIN1Q9UKV3 1341 aaKnown RBP17.07■□□□□ 0.32
PTPN7-201ENST00000309017 CENPBP07199 599 aaPredicted RBP17.06■□□□□ 0.32
PTPN7-201ENST00000309017 RB1CC1Q8TDY2 1594 aa17.04■□□□□ 0.32
PTPN7-201ENST00000309017 NEUROD1Q13562 356 aa17.03■□□□□ 0.32
PTPN7-201ENST00000309017 DIEXFQ68CQ4 756 aaKnown RBP17.01■□□□□ 0.31
PTPN7-201ENST00000309017 GTF3C3Q9Y5Q9 886 aa16.99■□□□□ 0.31
PTPN7-201ENST00000309017 YTHDC1Q96MU7 727 aaKnown RBP16.87■□□□□ 0.29
PTPN7-201ENST00000309017 CECR2Q9BXF3 1484 aa16.8■□□□□ 0.28
PTPN7-201ENST00000309017 UBTFP17480 764 aaKnown RBP16.77■□□□□ 0.27
PTPN7-201ENST00000309017 MYT1Q01538 1121 aa16.75■□□□□ 0.27
PTPN7-201ENST00000309017 MROH2BQ7Z745 1585 aa16.72■□□□□ 0.27
PTPN7-201ENST00000309017 ZNF316A6NFI3 1004 aaPredicted RBP16.71■□□□□ 0.27
PTPN7-201ENST00000309017 HNRNPUL2Q1KMD3 747 aaKnown RBP16.65■□□□□ 0.26
PTPN7-201ENST00000309017 WIZO95785 1651 aa16.64■□□□□ 0.25
PTPN7-201ENST00000309017 CEP162Q5TB80 1403 aa16.62■□□□□ 0.25
PTPN7-201ENST00000309017 MIER1Q8N108 512 aa16.55■□□□□ 0.24
PTPN7-201ENST00000309017 CSRNP3Q8WYN3 585 aa16.55■□□□□ 0.24
PTPN7-201ENST00000309017 RANGAP1P46060 587 aaPredicted RBP16.54■□□□□ 0.24
PTPN7-201ENST00000309017 APLP2Q06481 763 aa16.54■□□□□ 0.24
PTPN7-201ENST00000309017 ABCC8Q09428 1581 aa16.53■□□□□ 0.24
PTPN7-201ENST00000309017 CCDC88BA6NC98 1476 aa16.53■□□□□ 0.24
PTPN7-201ENST00000309017 WRNQ14191 1432 aaPredicted RBP eCLIP16.51■□□□□ 0.23
PTPN7-201ENST00000309017 SOGA1O94964 1423 aa16.5■□□□□ 0.23
PTPN7-201ENST00000309017 NACADO15069 1562 aa16.49■□□□□ 0.23
PTPN7-201ENST00000309017 TNIKQ9UKE5 1360 aa16.49■□□□□ 0.23
PTPN7-201ENST00000309017 BAZ1AQ9NRL2 1556 aaPredicted RBP16.45■□□□□ 0.22
PTPN7-201ENST00000309017 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
PTPN7-201ENST00000309017 GOLGA3Q08378 1498 aa16.35■□□□□ 0.21
PTPN7-201ENST00000309017 EEA1Q15075 1411 aa16.35■□□□□ 0.21
PTPN7-201ENST00000309017 TOP2AP11388 1531 aaKnown RBP16.31■□□□□ 0.2
PTPN7-201ENST00000309017 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
PTPN7-201ENST00000309017 CLIP1P30622 1438 aa16.27■□□□□ 0.2
PTPN7-201ENST00000309017 SMARCA2P51531 1590 aa16.24■□□□□ 0.19
PTPN7-201ENST00000309017 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
PTPN7-201ENST00000309017 CEP164Q9UPV0 1460 aa16.19■□□□□ 0.18
PTPN7-201ENST00000309017 SMARCA4P51532 1647 aa16.18■□□□□ 0.18
PTPN7-201ENST00000309017 ITGAEP38570 1179 aa16.16■□□□□ 0.18
PTPN7-201ENST00000309017 SUPT16HQ9Y5B9 1047 aaKnown RBP16.15■□□□□ 0.18
PTPN7-201ENST00000309017 VPS8Q8N3P4 1428 aa16.15■□□□□ 0.18
PTPN7-201ENST00000309017 CLSPNQ9HAW4 1339 aa16.11■□□□□ 0.17
PTPN7-201ENST00000309017 BCANQ96GW7 911 aa16.08■□□□□ 0.17
PTPN7-201ENST00000309017 RAPGEF2Q9Y4G8 1499 aa16.04■□□□□ 0.16
PTPN7-201ENST00000309017 DHX57Q6P158 1386 aaKnown RBP16.03■□□□□ 0.16
PTPN7-201ENST00000309017 KANK4Q5T7N3 995 aaPredicted RBP15.99■□□□□ 0.15
PTPN7-201ENST00000309017 TSHZ2Q9NRE2 1034 aa15.99■□□□□ 0.15
PTPN7-201ENST00000309017 KIF21BO75037 1637 aa15.99■□□□□ 0.15
PTPN7-201ENST00000309017 SYNJ1O43426 1573 aa15.98■□□□□ 0.15
PTPN7-201ENST00000309017 BAZ1BQ9UIG0 1483 aaKnown RBP15.95■□□□□ 0.14
PTPN7-201ENST00000309017 NEFLP07196 543 aa15.95■□□□□ 0.14
PTPN7-201ENST00000309017 KCNH8Q96L42 1107 aa15.94■□□□□ 0.14
PTPN7-201ENST00000309017 FKBP8Q14318 412 aa15.93■□□□□ 0.14
PTPN7-201ENST00000309017 ANP32EQ9BTT0 268 aa15.93■□□□□ 0.14
PTPN7-201ENST00000309017 DDX10Q13206 875 aaKnown RBP15.9■□□□□ 0.14
PTPN7-201ENST00000309017 ATP1B4Q9UN42 357 aaPredicted RBP15.87■□□□□ 0.13
PTPN7-201ENST00000309017 CCNB3Q8WWL7 1395 aa15.84■□□□□ 0.13
PTPN7-201ENST00000309017 FAM50AQ14320 339 aaKnown RBP15.83■□□□□ 0.13
PTPN7-201ENST00000309017 HIRIP3Q9BW71 556 aaPredicted RBP15.81■□□□□ 0.12
PTPN7-201ENST00000309017 TRIM52Q96A61 297 aa15.81■□□□□ 0.12
PTPN7-201ENST00000309017 UNC13AQ9UPW8 1703 aa15.79■□□□□ 0.12
PTPN7-201ENST00000309017 ARAP1Q96P48 1450 aa15.78■□□□□ 0.12
PTPN7-201ENST00000309017 SIN3AQ96ST3 1273 aa15.78■□□□□ 0.12
PTPN7-201ENST00000309017 RAB3GAP2Q9H2M9 1393 aa15.77■□□□□ 0.11
PTPN7-201ENST00000309017 ANP32CO43423 234 aa15.76■□□□□ 0.11
PTPN7-201ENST00000309017 ATAD2BQ9ULI0 1458 aa15.76■□□□□ 0.11
PTPN7-201ENST00000309017 RRBP1Q9P2E9 1410 aaKnown RBP15.74■□□□□ 0.11
PTPN7-201ENST00000309017 KIF27Q86VH2 1401 aa15.71■□□□□ 0.11
PTPN7-201ENST00000309017 ERICH6Q7L0X2 663 aa15.7■□□□□ 0.1
PTPN7-201ENST00000309017 BCL11AQ9H165 835 aa15.7■□□□□ 0.1
PTPN7-201ENST00000309017 RBM19Q9Y4C8 960 aaKnown RBP15.7■□□□□ 0.1
PTPN7-201ENST00000309017 PRXQ9BXM0 1461 aa15.69■□□□□ 0.1
PTPN7-201ENST00000309017 P3H3Q8IVL6 736 aa15.69■□□□□ 0.1
PTPN7-201ENST00000309017 TOP2BQ02880 1626 aa15.68■□□□□ 0.1
PTPN7-201ENST00000309017 ERICH3Q5RHP9 1530 aa15.67■□□□□ 0.1
PTPN7-201ENST00000309017 PEG3Q9GZU2 1588 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms