RNA–Protein interactions for RNA: ENST00000514055.5

CAST-240, Transcript of calpastatin, humanhuman

TSL 5

Gene CAST, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAST-240ENST00000514055 NISCHQ9Y2I1 1504 aa21.9■■□□□ 1.1
CAST-240ENST00000514055 ABCC9O60706 1549 aa20.47■□□□□ 0.87
CAST-240ENST00000514055 CCDC180Q9P1Z9 1646 aa19.78■□□□□ 0.76
CAST-240ENST00000514055 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
CAST-240ENST00000514055 RB1CC1Q8TDY2 1594 aa19.12■□□□□ 0.65
CAST-240ENST00000514055 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
CAST-240ENST00000514055 NACADO15069 1562 aa18.86■□□□□ 0.61
CAST-240ENST00000514055 DCAF8L2P0C7V8 631 aa18.81■□□□□ 0.6
CAST-240ENST00000514055 UNC13AQ9UPW8 1703 aa18.72■□□□□ 0.59
CAST-240ENST00000514055 BICRAQ9NZM4 1560 aa18.67■□□□□ 0.58
CAST-240ENST00000514055 CECR2Q9BXF3 1484 aa18.46■□□□□ 0.54
CAST-240ENST00000514055 DNAJC5Q9H3Z4 198 aa18.42■□□□□ 0.54
CAST-240ENST00000514055 CC2D2AQ9P2K1 1620 aa18.41■□□□□ 0.54
CAST-240ENST00000514055 MYO15BQ96JP2 1530 aa18.39■□□□□ 0.53
CAST-240ENST00000514055 EIF4G1Q04637 1599 aaKnown RBP18.23■□□□□ 0.51
CAST-240ENST00000514055 SHROOM4Q9ULL8 1493 aa18.2■□□□□ 0.5
CAST-240ENST00000514055 SCRIBQ14160 1630 aa18.12■□□□□ 0.49
CAST-240ENST00000514055 ZCCHC6Q5VYS8 1495 aaKnown RBP18.04■□□□□ 0.48
CAST-240ENST00000514055 DCAF1Q9Y4B6 1507 aa17.98■□□□□ 0.47
CAST-240ENST00000514055 CUX2O14529 1486 aa17.75■□□□□ 0.43
CAST-240ENST00000514055 ERCC6Q03468 1493 aa17.65■□□□□ 0.42
CAST-240ENST00000514055 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
CAST-240ENST00000514055 TRIM41Q8WV44 630 aa17.46■□□□□ 0.39
CAST-240ENST00000514055 NESP48681 1621 aa17.45■□□□□ 0.38
CAST-240ENST00000514055 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
CAST-240ENST00000514055 THOC2Q8NI27 1593 aaKnown RBP17.3■□□□□ 0.36
CAST-240ENST00000514055 HMGXB3Q12766 1538 aa17.25■□□□□ 0.35
CAST-240ENST00000514055 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
CAST-240ENST00000514055 SMARCA4P51532 1647 aa17.18■□□□□ 0.34
CAST-240ENST00000514055 BAZ1BQ9UIG0 1483 aaKnown RBP17.15■□□□□ 0.34
CAST-240ENST00000514055 KIF21AQ7Z4S6 1674 aa17.13■□□□□ 0.33
CAST-240ENST00000514055 LAMC3Q9Y6N6 1575 aa17.11■□□□□ 0.33
CAST-240ENST00000514055 PDS5BQ9NTI5 1447 aa17.05■□□□□ 0.32
CAST-240ENST00000514055 BAZ1AQ9NRL2 1556 aaPredicted RBP16.99■□□□□ 0.31
CAST-240ENST00000514055 PEG3Q9GZU2 1588 aa16.98■□□□□ 0.31
CAST-240ENST00000514055 MRC2Q9UBG0 1479 aa16.97■□□□□ 0.31
CAST-240ENST00000514055 CADPSQ9ULU8 1353 aa16.93■□□□□ 0.3
CAST-240ENST00000514055 WDR62O43379 1518 aa16.93■□□□□ 0.3
CAST-240ENST00000514055 MROH2BQ7Z745 1585 aa16.92■□□□□ 0.3
CAST-240ENST00000514055 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
CAST-240ENST00000514055 CEP164Q9UPV0 1460 aa16.78■□□□□ 0.28
CAST-240ENST00000514055 RIMBP3CA6NJZ7 1639 aa16.74■□□□□ 0.27
CAST-240ENST00000514055 RIMBP3BA6NNM3 1639 aa16.74■□□□□ 0.27
CAST-240ENST00000514055 RIMBP3Q9UFD9 1639 aa16.74■□□□□ 0.27
CAST-240ENST00000514055 FANCD2Q9BXW9 1451 aa16.74■□□□□ 0.27
CAST-240ENST00000514055 WIZO95785 1651 aa16.68■□□□□ 0.26
CAST-240ENST00000514055 URB2Q14146 1524 aaKnown RBP16.66■□□□□ 0.26
CAST-240ENST00000514055 ARHGEF11O15085 1522 aa16.64■□□□□ 0.25
CAST-240ENST00000514055 CFTRP13569 1480 aa16.61■□□□□ 0.25
CAST-240ENST00000514055 CYB5RLQ6IPT4 315 aa16.6■□□□□ 0.25
CAST-240ENST00000514055 ZNF608Q9ULD9 1512 aaPredicted RBP16.58■□□□□ 0.24
CAST-240ENST00000514055 TRHP20396 242 aaPredicted RBP16.57■□□□□ 0.24
CAST-240ENST00000514055 ARAP1Q96P48 1450 aa16.48■□□□□ 0.23
CAST-240ENST00000514055 IFT140Q96RY7 1462 aa16.46■□□□□ 0.23
CAST-240ENST00000514055 AEBP2Q6ZN18 517 aaPredicted RBP16.44■□□□□ 0.22
CAST-240ENST00000514055 TOP2AP11388 1531 aaKnown RBP16.39■□□□□ 0.21
CAST-240ENST00000514055 EIF4G3O43432 1585 aaKnown RBP16.38■□□□□ 0.21
CAST-240ENST00000514055 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
CAST-240ENST00000514055 TOPBP1Q92547 1522 aa16.37■□□□□ 0.21
CAST-240ENST00000514055 CHD1O14646 1710 aa16.36■□□□□ 0.21
CAST-240ENST00000514055 AQRO60306 1485 aaKnown RBP eCLIP16.35■□□□□ 0.211e-6■■■■□ 22.8
CAST-240ENST00000514055 FBLN2P98095 1184 aa16.35■□□□□ 0.21
CAST-240ENST00000514055 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
CAST-240ENST00000514055 CCDC88BA6NC98 1476 aa16.26■□□□□ 0.19
CAST-240ENST00000514055 TARBP1Q13395 1621 aaKnown RBP16.24■□□□□ 0.19
CAST-240ENST00000514055 DNMBPQ6XZF7 1577 aa16.22■□□□□ 0.19
CAST-240ENST00000514055 ABCC8Q09428 1581 aa16.19■□□□□ 0.18
CAST-240ENST00000514055 RAD54L2Q9Y4B4 1467 aa16.18■□□□□ 0.18
CAST-240ENST00000514055 TDRD9Q8NDG6 1382 aaKnown RBP16.18■□□□□ 0.18
CAST-240ENST00000514055 POLA1P09884 1462 aaPredicted RBP16.17■□□□□ 0.18
CAST-240ENST00000514055 CLASP1Q7Z460 1538 aa16.17■□□□□ 0.18
CAST-240ENST00000514055 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
CAST-240ENST00000514055 CHMP7Q8WUX9 453 aaPredicted RBP16.1■□□□□ 0.17
CAST-240ENST00000514055 SOGA1O94964 1423 aa16.09■□□□□ 0.17
CAST-240ENST00000514055 SYNJ1O43426 1573 aa16.06■□□□□ 0.16
CAST-240ENST00000514055 GAPVD1Q14C86 1478 aa16.05■□□□□ 0.16
CAST-240ENST00000514055 FGD5Q6ZNL6 1462 aa16■□□□□ 0.15
CAST-240ENST00000514055 MAGI1Q96QZ7 1491 aaPredicted RBP16■□□□□ 0.15
CAST-240ENST00000514055 SYNJ2O15056 1496 aa15.98■□□□□ 0.15
CAST-240ENST00000514055 GRIN2BQ13224 1484 aa15.97■□□□□ 0.15
CAST-240ENST00000514055 ERCC6L2Q5T890 1561 aa15.96■□□□□ 0.15
CAST-240ENST00000514055 WDR97A6NE52 1622 aa15.94■□□□□ 0.14
CAST-240ENST00000514055 CUX1P39880 1505 aa15.92■□□□□ 0.14
CAST-240ENST00000514055 ILDR1Q86SU0 546 aaPredicted RBP15.86■□□□□ 0.13
CAST-240ENST00000514055 PBRM1Q86U86 1689 aa15.86■□□□□ 0.13
CAST-240ENST00000514055 CEP170Q5SW79 1584 aa15.81■□□□□ 0.12
CAST-240ENST00000514055 KIF13AQ9H1H9 1805 aa15.81■□□□□ 0.12
CAST-240ENST00000514055 KDM4FA0A1W2PPD8 638 aa15.79■□□□□ 0.12
CAST-240ENST00000514055 GRIN2AQ12879 1464 aa15.78■□□□□ 0.12
CAST-240ENST00000514055 ABCA5Q8WWZ7 1642 aa15.77■□□□□ 0.12
CAST-240ENST00000514055 NUP160Q12769 1436 aa15.76■□□□□ 0.11
CAST-240ENST00000514055 ABCA10Q8WWZ4 1543 aa15.75■□□□□ 0.11
CAST-240ENST00000514055 FAM69CQ0P6D2 419 aa15.74■□□□□ 0.11
CAST-240ENST00000514055 SHROOM2Q13796 1616 aa15.72■□□□□ 0.11
CAST-240ENST00000514055 ADAMTS12P58397 1594 aa15.7■□□□□ 0.1
CAST-240ENST00000514055 PRG4Q92954 1404 aaPredicted RBP15.68■□□□□ 0.1
CAST-240ENST00000514055 ABCC10Q5T3U5 1492 aa15.67■□□□□ 0.1
CAST-240ENST00000514055 FHAD1B1AJZ9 1412 aa15.63■□□□□ 0.09
CAST-240ENST00000514055 JPH4Q96JJ6 628 aa15.62■□□□□ 0.09
CAST-240ENST00000514055 DIP2BQ9P265 1576 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms