RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 NISCHQ9Y2I1 1504 aa26.69■■□□□ 1.86
PTPN7-217ENST00000495688 SHROOM4Q9ULL8 1493 aa23.04■■□□□ 1.28
PTPN7-217ENST00000495688 SUPT5HO00267 1087 aaKnown RBP22.64■■□□□ 1.21
PTPN7-217ENST00000495688 ZCCHC6Q5VYS8 1495 aaKnown RBP22.59■■□□□ 1.21
PTPN7-217ENST00000495688 CCDC180Q9P1Z9 1646 aa22.53■■□□□ 1.2
PTPN7-217ENST00000495688 DCAF8L2P0C7V8 631 aa22.3■■□□□ 1.16
PTPN7-217ENST00000495688 CHIC1Q5VXU3 224 aa22■■□□□ 1.11
PTPN7-217ENST00000495688 MYO15BQ96JP2 1530 aa21.99■■□□□ 1.11
PTPN7-217ENST00000495688 DCAF1Q9Y4B6 1507 aa21.79■■□□□ 1.08
PTPN7-217ENST00000495688 HRCP23327 699 aa21.5■■□□□ 1.03
PTPN7-217ENST00000495688 PCGF6Q9BYE7 350 aa21.5■■□□□ 1.03
PTPN7-217ENST00000495688 LOC105371045A0A1W2PR82 267 aa21.44■■□□□ 1.02
PTPN7-217ENST00000495688 ABCC9O60706 1549 aa21.33■■□□□ 1.01
PTPN7-217ENST00000495688 SCRIBQ14160 1630 aa21.31■■□□□ 1
PTPN7-217ENST00000495688 RSF1Q96T23 1441 aaPredicted RBP21.22■□□□□ 0.99
PTPN7-217ENST00000495688 PPARGC1BQ86YN6 1023 aaKnown RBP21.18■□□□□ 0.98
PTPN7-217ENST00000495688 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
PTPN7-217ENST00000495688 TRIM41Q8WV44 630 aa21■□□□□ 0.95
PTPN7-217ENST00000495688 TRIM26Q12899 539 aaPredicted RBP20.96■□□□□ 0.95
PTPN7-217ENST00000495688 FAM9AQ8IZU1 332 aaPredicted RBP20.95■□□□□ 0.94
PTPN7-217ENST00000495688 CECR2Q9BXF3 1484 aa20.91■□□□□ 0.94
PTPN7-217ENST00000495688 EHMT2Q96KQ7 1210 aa20.85■□□□□ 0.93
PTPN7-217ENST00000495688 NACADO15069 1562 aa20.83■□□□□ 0.93
PTPN7-217ENST00000495688 MROH2BQ7Z745 1585 aa20.82■□□□□ 0.92
PTPN7-217ENST00000495688 WIZO95785 1651 aa20.72■□□□□ 0.91
PTPN7-217ENST00000495688 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
PTPN7-217ENST00000495688 ZEB1P37275 1124 aaPredicted RBP20.46■□□□□ 0.87
PTPN7-217ENST00000495688 EIF4G1Q04637 1599 aaKnown RBP20.43■□□□□ 0.86
PTPN7-217ENST00000495688 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
PTPN7-217ENST00000495688 TOP2AP11388 1531 aaKnown RBP20.31■□□□□ 0.84
PTPN7-217ENST00000495688 SMARCA4P51532 1647 aa20.3■□□□□ 0.84
PTPN7-217ENST00000495688 CCDC88BA6NC98 1476 aa20.3■□□□□ 0.84
PTPN7-217ENST00000495688 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.84
PTPN7-217ENST00000495688 SMARCA2P51531 1590 aa20.25■□□□□ 0.83
PTPN7-217ENST00000495688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.21■□□□□ 0.83
PTPN7-217ENST00000495688 TTBK1Q5TCY1 1321 aaPredicted RBP20.19■□□□□ 0.82
PTPN7-217ENST00000495688 SOGA1O94964 1423 aa20.17■□□□□ 0.82
PTPN7-217ENST00000495688 PABPN1Q86U42 306 aaKnown RBP eCLIP20.15■□□□□ 0.82
PTPN7-217ENST00000495688 CCER1Q8TC90 406 aaPredicted RBP20.1■□□□□ 0.81
PTPN7-217ENST00000495688 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
PTPN7-217ENST00000495688 CEP162Q5TB80 1403 aa20.09■□□□□ 0.81
PTPN7-217ENST00000495688 CSRNP3Q8WYN3 585 aa20.02■□□□□ 0.8
PTPN7-217ENST00000495688 WRNQ14191 1432 aaPredicted RBP eCLIP20.02■□□□□ 0.8
PTPN7-217ENST00000495688 UBTFP17480 764 aaKnown RBP20.01■□□□□ 0.79
PTPN7-217ENST00000495688 BICRAQ9NZM4 1560 aa20.01■□□□□ 0.79
PTPN7-217ENST00000495688 TNIKQ9UKE5 1360 aa20■□□□□ 0.79
PTPN7-217ENST00000495688 SCAF1Q9H7N4 1312 aaKnown RBP19.94■□□□□ 0.78
PTPN7-217ENST00000495688 EEA1Q15075 1411 aa19.92■□□□□ 0.78
PTPN7-217ENST00000495688 GOLGA3Q08378 1498 aa19.86■□□□□ 0.77
PTPN7-217ENST00000495688 PEG3Q9GZU2 1588 aa19.84■□□□□ 0.77
PTPN7-217ENST00000495688 SYNJ1O43426 1573 aa19.83■□□□□ 0.77
PTPN7-217ENST00000495688 ATAD2BQ9ULI0 1458 aa19.77■□□□□ 0.76
PTPN7-217ENST00000495688 DIEXFQ68CQ4 756 aaKnown RBP19.76■□□□□ 0.75
PTPN7-217ENST00000495688 CEP164Q9UPV0 1460 aa19.73■□□□□ 0.75
PTPN7-217ENST00000495688 BAZ1BQ9UIG0 1483 aaKnown RBP19.72■□□□□ 0.75
PTPN7-217ENST00000495688 RANGAP1P46060 587 aaPredicted RBP19.7■□□□□ 0.74
PTPN7-217ENST00000495688 NEUROD1Q13562 356 aa19.69■□□□□ 0.74
PTPN7-217ENST00000495688 CLIP1P30622 1438 aa19.68■□□□□ 0.74
PTPN7-217ENST00000495688 KIF21BO75037 1637 aa19.68■□□□□ 0.74
PTPN7-217ENST00000495688 HNRNPUL2Q1KMD3 747 aaKnown RBP19.68■□□□□ 0.74
PTPN7-217ENST00000495688 RAPGEF2Q9Y4G8 1499 aa19.66■□□□□ 0.74
PTPN7-217ENST00000495688 ACIN1Q9UKV3 1341 aaKnown RBP19.65■□□□□ 0.74
PTPN7-217ENST00000495688 VPS8Q8N3P4 1428 aa19.58■□□□□ 0.73
PTPN7-217ENST00000495688 ZNF316A6NFI3 1004 aaPredicted RBP19.55■□□□□ 0.72
PTPN7-217ENST00000495688 APLP2Q06481 763 aa19.52■□□□□ 0.72
PTPN7-217ENST00000495688 TOP2BQ02880 1626 aa19.52■□□□□ 0.72
PTPN7-217ENST00000495688 GTF3C3Q9Y5Q9 886 aa19.48■□□□□ 0.71
PTPN7-217ENST00000495688 CENPBP07199 599 aaPredicted RBP19.47■□□□□ 0.71
PTPN7-217ENST00000495688 PELP1Q8IZL8 1130 aaKnown RBP19.43■□□□□ 0.7
PTPN7-217ENST00000495688 BIVM-ERCC5R4GMW8 1640 aa19.42■□□□□ 0.7
PTPN7-217ENST00000495688 YTHDC1Q96MU7 727 aaKnown RBP19.39■□□□□ 0.7
PTPN7-217ENST00000495688 PRXQ9BXM0 1461 aa19.38■□□□□ 0.69
PTPN7-217ENST00000495688 MIER1Q8N108 512 aa19.36■□□□□ 0.69
PTPN7-217ENST00000495688 CUX1P39880 1505 aa19.36■□□□□ 0.69
PTPN7-217ENST00000495688 ARAP1Q96P48 1450 aa19.35■□□□□ 0.69
PTPN7-217ENST00000495688 KANK4Q5T7N3 995 aaPredicted RBP19.35■□□□□ 0.69
PTPN7-217ENST00000495688 ERICH3Q5RHP9 1530 aa19.34■□□□□ 0.69
PTPN7-217ENST00000495688 NCAPD3P42695 1498 aa19.32■□□□□ 0.68
PTPN7-217ENST00000495688 HMGXB3Q12766 1538 aa19.29■□□□□ 0.68
PTPN7-217ENST00000495688 KIF27Q86VH2 1401 aa19.26■□□□□ 0.67
PTPN7-217ENST00000495688 DHX57Q6P158 1386 aaKnown RBP19.23■□□□□ 0.67
PTPN7-217ENST00000495688 CFTRP13569 1480 aa19.22■□□□□ 0.67
PTPN7-217ENST00000495688 ARHGAP35Q9NRY4 1499 aa19.17■□□□□ 0.66
PTPN7-217ENST00000495688 ITGAEP38570 1179 aa19.14■□□□□ 0.65
PTPN7-217ENST00000495688 RRBP1Q9P2E9 1410 aaKnown RBP19.14■□□□□ 0.65
PTPN7-217ENST00000495688 CLSPNQ9HAW4 1339 aa19.12■□□□□ 0.65
PTPN7-217ENST00000495688 CUX2O14529 1486 aa19.1■□□□□ 0.65
PTPN7-217ENST00000495688 IGF1RP08069 1367 aa19.08■□□□□ 0.65
PTPN7-217ENST00000495688 CCNB3Q8WWL7 1395 aa19.08■□□□□ 0.65
PTPN7-217ENST00000495688 CADPSQ9ULU8 1353 aa19■□□□□ 0.63
PTPN7-217ENST00000495688 PRDM2Q13029 1718 aa19■□□□□ 0.63
PTPN7-217ENST00000495688 CARMIL1Q5VZK9 1371 aa19■□□□□ 0.63
PTPN7-217ENST00000495688 FGD5Q6ZNL6 1462 aa18.99■□□□□ 0.63
PTPN7-217ENST00000495688 P3H3Q8IVL6 736 aa18.96■□□□□ 0.63
PTPN7-217ENST00000495688 RAB3GAP2Q9H2M9 1393 aa18.96■□□□□ 0.63
PTPN7-217ENST00000495688 TIAM1Q13009 1591 aa18.95■□□□□ 0.62
PTPN7-217ENST00000495688 PHLDB1Q86UU1 1377 aa18.91■□□□□ 0.62
PTPN7-217ENST00000495688 ATP1B4Q9UN42 357 aaPredicted RBP18.9■□□□□ 0.62
PTPN7-217ENST00000495688 LRRC9Q6ZRR7 1453 aa18.89■□□□□ 0.62
PTPN7-217ENST00000495688 MAPKBP1O60336 1514 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms