RNA–Protein interactions for RNA: ENST00000367279.8

PTPN7-202, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN7, Length 3,265 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-202ENST00000367279 NISCHQ9Y2I1 1504 aa24.89■■□□□ 1.58
PTPN7-202ENST00000367279 SHROOM4Q9ULL8 1493 aa21.79■■□□□ 1.08
PTPN7-202ENST00000367279 SUPT5HO00267 1087 aaKnown RBP21.45■■□□□ 1.02
PTPN7-202ENST00000367279 DCAF8L2P0C7V8 631 aa21.26■□□□□ 0.99
PTPN7-202ENST00000367279 ZCCHC6Q5VYS8 1495 aaKnown RBP21.02■□□□□ 0.96
PTPN7-202ENST00000367279 CCDC180Q9P1Z9 1646 aa20.94■□□□□ 0.94
PTPN7-202ENST00000367279 CHIC1Q5VXU3 224 aa20.65■□□□□ 0.9
PTPN7-202ENST00000367279 MYO15BQ96JP2 1530 aa20.54■□□□□ 0.88
PTPN7-202ENST00000367279 PCGF6Q9BYE7 350 aa20.33■□□□□ 0.85
PTPN7-202ENST00000367279 LOC105371045A0A1W2PR82 267 aa20.22■□□□□ 0.83
PTPN7-202ENST00000367279 HRCP23327 699 aa20.21■□□□□ 0.83
PTPN7-202ENST00000367279 DCAF1Q9Y4B6 1507 aa20.2■□□□□ 0.82
PTPN7-202ENST00000367279 SCRIBQ14160 1630 aa19.98■□□□□ 0.79
PTPN7-202ENST00000367279 PPARGC1BQ86YN6 1023 aaKnown RBP19.98■□□□□ 0.79
PTPN7-202ENST00000367279 EHMT2Q96KQ7 1210 aa19.91■□□□□ 0.78
PTPN7-202ENST00000367279 FAM9AQ8IZU1 332 aaPredicted RBP19.9■□□□□ 0.78
PTPN7-202ENST00000367279 TRIM41Q8WV44 630 aa19.86■□□□□ 0.77
PTPN7-202ENST00000367279 ABCC9O60706 1549 aa19.85■□□□□ 0.77
PTPN7-202ENST00000367279 RSF1Q96T23 1441 aaPredicted RBP19.81■□□□□ 0.76
PTPN7-202ENST00000367279 TRIM26Q12899 539 aaPredicted RBP19.74■□□□□ 0.75
PTPN7-202ENST00000367279 RB1CC1Q8TDY2 1594 aa19.65■□□□□ 0.74
PTPN7-202ENST00000367279 CECR2Q9BXF3 1484 aa19.55■□□□□ 0.72
PTPN7-202ENST00000367279 MROH2BQ7Z745 1585 aa19.44■□□□□ 0.7
PTPN7-202ENST00000367279 NACADO15069 1562 aa19.43■□□□□ 0.7
PTPN7-202ENST00000367279 WIZO95785 1651 aa19.36■□□□□ 0.69
PTPN7-202ENST00000367279 ZEB1P37275 1124 aaPredicted RBP19.31■□□□□ 0.68
PTPN7-202ENST00000367279 TTBK1Q5TCY1 1321 aaPredicted RBP19.26■□□□□ 0.67
PTPN7-202ENST00000367279 BAZ1AQ9NRL2 1556 aaPredicted RBP19.11■□□□□ 0.65
PTPN7-202ENST00000367279 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.11■□□□□ 0.65
PTPN7-202ENST00000367279 CCER1Q8TC90 406 aaPredicted RBP19.07■□□□□ 0.64
PTPN7-202ENST00000367279 ABCC8Q09428 1581 aa19.05■□□□□ 0.64
PTPN7-202ENST00000367279 PABPN1Q86U42 306 aaKnown RBP eCLIP19.05■□□□□ 0.64
PTPN7-202ENST00000367279 UBTFP17480 764 aaKnown RBP18.99■□□□□ 0.63
PTPN7-202ENST00000367279 CCDC88BA6NC98 1476 aa18.98■□□□□ 0.63
PTPN7-202ENST00000367279 TOP2AP11388 1531 aaKnown RBP18.94■□□□□ 0.62
PTPN7-202ENST00000367279 SMARCA4P51532 1647 aa18.93■□□□□ 0.62
PTPN7-202ENST00000367279 SOGA1O94964 1423 aa18.9■□□□□ 0.62
PTPN7-202ENST00000367279 EIF4G1Q04637 1599 aaKnown RBP18.89■□□□□ 0.62
PTPN7-202ENST00000367279 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
PTPN7-202ENST00000367279 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
PTPN7-202ENST00000367279 CEP162Q5TB80 1403 aa18.84■□□□□ 0.61
PTPN7-202ENST00000367279 UNC13AQ9UPW8 1703 aa18.83■□□□□ 0.6
PTPN7-202ENST00000367279 RANGAP1P46060 587 aaPredicted RBP18.81■□□□□ 0.6
PTPN7-202ENST00000367279 RUSC2Q8N2Y8 1516 aa18.8■□□□□ 0.6
PTPN7-202ENST00000367279 SCAF1Q9H7N4 1312 aaKnown RBP18.74■□□□□ 0.59
PTPN7-202ENST00000367279 TNIKQ9UKE5 1360 aa18.72■□□□□ 0.59
PTPN7-202ENST00000367279 DIEXFQ68CQ4 756 aaKnown RBP18.67■□□□□ 0.58
PTPN7-202ENST00000367279 WRNQ14191 1432 aaPredicted RBP eCLIP18.67■□□□□ 0.58
PTPN7-202ENST00000367279 HNRNPUL2Q1KMD3 747 aaKnown RBP18.66■□□□□ 0.58
PTPN7-202ENST00000367279 EEA1Q15075 1411 aa18.64■□□□□ 0.57
PTPN7-202ENST00000367279 GOLGA3Q08378 1498 aa18.63■□□□□ 0.57
PTPN7-202ENST00000367279 APLP2Q06481 763 aa18.6■□□□□ 0.57
PTPN7-202ENST00000367279 BICRAQ9NZM4 1560 aa18.59■□□□□ 0.57
PTPN7-202ENST00000367279 NEUROD1Q13562 356 aa18.54■□□□□ 0.56
PTPN7-202ENST00000367279 ACIN1Q9UKV3 1341 aaKnown RBP18.52■□□□□ 0.55
PTPN7-202ENST00000367279 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
PTPN7-202ENST00000367279 BAZ1BQ9UIG0 1483 aaKnown RBP18.51■□□□□ 0.55
PTPN7-202ENST00000367279 CLIP1P30622 1438 aa18.5■□□□□ 0.55
PTPN7-202ENST00000367279 CEP164Q9UPV0 1460 aa18.49■□□□□ 0.55
PTPN7-202ENST00000367279 CENPBP07199 599 aaPredicted RBP18.48■□□□□ 0.55
PTPN7-202ENST00000367279 YTHDC1Q96MU7 727 aaKnown RBP18.47■□□□□ 0.55
PTPN7-202ENST00000367279 ATAD2BQ9ULI0 1458 aa18.47■□□□□ 0.55
PTPN7-202ENST00000367279 ZNF316A6NFI3 1004 aaPredicted RBP18.45■□□□□ 0.54
PTPN7-202ENST00000367279 GTF3C3Q9Y5Q9 886 aa18.41■□□□□ 0.54
PTPN7-202ENST00000367279 RAPGEF2Q9Y4G8 1499 aa18.4■□□□□ 0.54
PTPN7-202ENST00000367279 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
PTPN7-202ENST00000367279 PELP1Q8IZL8 1130 aaKnown RBP18.36■□□□□ 0.53
PTPN7-202ENST00000367279 VPS8Q8N3P4 1428 aa18.34■□□□□ 0.53
PTPN7-202ENST00000367279 KIF21BO75037 1637 aa18.34■□□□□ 0.53
PTPN7-202ENST00000367279 MIER1Q8N108 512 aa18.25■□□□□ 0.51
PTPN7-202ENST00000367279 ITGAEP38570 1179 aa18.23■□□□□ 0.51
PTPN7-202ENST00000367279 TOP2BQ02880 1626 aa18.19■□□□□ 0.5
PTPN7-202ENST00000367279 KANK4Q5T7N3 995 aaPredicted RBP18.18■□□□□ 0.5
PTPN7-202ENST00000367279 KIF27Q86VH2 1401 aa18.09■□□□□ 0.49
PTPN7-202ENST00000367279 ARAP1Q96P48 1450 aa18.07■□□□□ 0.48
PTPN7-202ENST00000367279 ATP1B4Q9UN42 357 aaPredicted RBP18.07■□□□□ 0.48
PTPN7-202ENST00000367279 CUX1P39880 1505 aa18.06■□□□□ 0.48
PTPN7-202ENST00000367279 BIVM-ERCC5R4GMW8 1640 aa18.06■□□□□ 0.48
PTPN7-202ENST00000367279 PRXQ9BXM0 1461 aa18.06■□□□□ 0.48
PTPN7-202ENST00000367279 ERICH3Q5RHP9 1530 aa18.02■□□□□ 0.48
PTPN7-202ENST00000367279 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
PTPN7-202ENST00000367279 DHX57Q6P158 1386 aaKnown RBP18.01■□□□□ 0.47
PTPN7-202ENST00000367279 P3H3Q8IVL6 736 aa17.99■□□□□ 0.47
PTPN7-202ENST00000367279 HMGXB3Q12766 1538 aa17.96■□□□□ 0.47
PTPN7-202ENST00000367279 CUX2O14529 1486 aa17.95■□□□□ 0.46
PTPN7-202ENST00000367279 CCNB3Q8WWL7 1395 aa17.93■□□□□ 0.46
PTPN7-202ENST00000367279 CFTRP13569 1480 aa17.93■□□□□ 0.46
PTPN7-202ENST00000367279 FAM50AQ14320 339 aaKnown RBP17.92■□□□□ 0.46
PTPN7-202ENST00000367279 ARHGAP35Q9NRY4 1499 aa17.92■□□□□ 0.46
PTPN7-202ENST00000367279 CLSPNQ9HAW4 1339 aa17.9■□□□□ 0.46
PTPN7-202ENST00000367279 RRBP1Q9P2E9 1410 aaKnown RBP17.86■□□□□ 0.45
PTPN7-202ENST00000367279 IGF1RP08069 1367 aa17.86■□□□□ 0.45
PTPN7-202ENST00000367279 CARMIL1Q5VZK9 1371 aa17.85■□□□□ 0.45
PTPN7-202ENST00000367279 RAB3GAP2Q9H2M9 1393 aa17.81■□□□□ 0.44
PTPN7-202ENST00000367279 CADPSQ9ULU8 1353 aa17.8■□□□□ 0.44
PTPN7-202ENST00000367279 FGD5Q6ZNL6 1462 aa17.79■□□□□ 0.44
PTPN7-202ENST00000367279 SIN3AQ96ST3 1273 aa17.76■□□□□ 0.43
PTPN7-202ENST00000367279 PHLDB1Q86UU1 1377 aa17.71■□□□□ 0.43
PTPN7-202ENST00000367279 HIRIP3Q9BW71 556 aaPredicted RBP17.71■□□□□ 0.43
PTPN7-202ENST00000367279 TIAM1Q13009 1591 aa17.71■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms