Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RC3H2Q9HBD1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC28.31■■■□□ 2.12
RC3H2Q9HBD1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC28.31■■■□□ 2.12
RC3H2Q9HBD1 AL161658.1-201ENST00000623641 1967 ntBASIC28.3■■■□□ 2.12
RC3H2Q9HBD1 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RC3H2Q9HBD1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RC3H2Q9HBD1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RC3H2Q9HBD1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC28.27■■■□□ 2.12
RC3H2Q9HBD1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC28.27■■■□□ 2.12
RC3H2Q9HBD1 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
RC3H2Q9HBD1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RC3H2Q9HBD1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.27■■■□□ 2.12
RC3H2Q9HBD1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.27■■■□□ 2.12
RC3H2Q9HBD1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RC3H2Q9HBD1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RC3H2Q9HBD1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RC3H2Q9HBD1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RC3H2Q9HBD1 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
RC3H2Q9HBD1 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.25■■■□□ 2.11
RC3H2Q9HBD1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
RC3H2Q9HBD1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.23■■■□□ 2.11
RC3H2Q9HBD1 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RC3H2Q9HBD1 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC28.23■■■□□ 2.11
RC3H2Q9HBD1 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RC3H2Q9HBD1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RC3H2Q9HBD1 GPX1-201ENST00000419349 1106 ntBASIC28.22■■■□□ 2.11
RC3H2Q9HBD1 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H2Q9HBD1 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
RC3H2Q9HBD1 ABHD17AP5-201ENST00000580133 923 ntBASIC28.21■■■□□ 2.11
RC3H2Q9HBD1 AC010864.1-201ENST00000609407 1511 ntBASIC28.21■■■□□ 2.11
RC3H2Q9HBD1 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
RC3H2Q9HBD1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RC3H2Q9HBD1 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RC3H2Q9HBD1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
RC3H2Q9HBD1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
RC3H2Q9HBD1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RC3H2Q9HBD1 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RC3H2Q9HBD1 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RC3H2Q9HBD1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.17■■■□□ 2.1
RC3H2Q9HBD1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
RC3H2Q9HBD1 RNF126P1-201ENST00000567452 1320 ntBASIC28.17■■■□□ 2.1
RC3H2Q9HBD1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
RC3H2Q9HBD1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
RC3H2Q9HBD1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
RC3H2Q9HBD1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC28.15■■■□□ 2.1
RC3H2Q9HBD1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RC3H2Q9HBD1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RC3H2Q9HBD1 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
RC3H2Q9HBD1 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RC3H2Q9HBD1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
RC3H2Q9HBD1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RC3H2Q9HBD1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.11■■■□□ 2.09
RC3H2Q9HBD1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC28.11■■■□□ 2.09
RC3H2Q9HBD1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RC3H2Q9HBD1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.11■■■□□ 2.09
RC3H2Q9HBD1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RC3H2Q9HBD1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC28.1■■■□□ 2.09
RC3H2Q9HBD1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
RC3H2Q9HBD1 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
RC3H2Q9HBD1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.06■■■□□ 2.08
RC3H2Q9HBD1 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
RC3H2Q9HBD1 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
RC3H2Q9HBD1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
RC3H2Q9HBD1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
RC3H2Q9HBD1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
RC3H2Q9HBD1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
RC3H2Q9HBD1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.05■■■□□ 2.08
RC3H2Q9HBD1 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RC3H2Q9HBD1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.04■■■□□ 2.08
RC3H2Q9HBD1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC28.04■■■□□ 2.08
RC3H2Q9HBD1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
RC3H2Q9HBD1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
RC3H2Q9HBD1 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC28.03■■■□□ 2.08
RC3H2Q9HBD1 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H2Q9HBD1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H2Q9HBD1 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H2Q9HBD1 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
RC3H2Q9HBD1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
RC3H2Q9HBD1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.01■■■□□ 2.07
RC3H2Q9HBD1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC28■■■□□ 2.07
RC3H2Q9HBD1 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
RC3H2Q9HBD1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.98■■■□□ 2.07
RC3H2Q9HBD1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC27.98■■■□□ 2.07
RC3H2Q9HBD1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
RC3H2Q9HBD1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC27.98■■■□□ 2.07
RC3H2Q9HBD1 AC008813.1-201ENST00000536597 885 ntBASIC27.98■■■□□ 2.07
RC3H2Q9HBD1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC27.98■■■□□ 2.07
RC3H2Q9HBD1 AC135983.2-203ENST00000454486 1613 ntBASIC27.97■■■□□ 2.07
RC3H2Q9HBD1 AC127502.1-201ENST00000399971 1502 ntBASIC27.97■■■□□ 2.07
RC3H2Q9HBD1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC27.96■■■□□ 2.07
RC3H2Q9HBD1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC27.96■■■□□ 2.07
RC3H2Q9HBD1 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
RC3H2Q9HBD1 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC27.96■■■□□ 2.07
RC3H2Q9HBD1 WHAMMP2-203ENST00000563942 1603 ntBASIC27.96■■■□□ 2.07
RC3H2Q9HBD1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
RC3H2Q9HBD1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
RC3H2Q9HBD1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
RC3H2Q9HBD1 AC022413.1-201ENST00000624602 984 ntBASIC27.95■■■□□ 2.06
RC3H2Q9HBD1 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
RC3H2Q9HBD1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms