Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 RARRES2P2-201ENST00000394842 485 ntBASIC7.91□□□□□ -1.14
SYNE1Q8NF91 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
SYNE1Q8NF91 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
SYNE1Q8NF91 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
SYNE1Q8NF91 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.14
SYNE1Q8NF91 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC7.9□□□□□ -1.14
SYNE1Q8NF91 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC7.9□□□□□ -1.14
SYNE1Q8NF91 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.14
SYNE1Q8NF91 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
SYNE1Q8NF91 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC7.9□□□□□ -1.15
SYNE1Q8NF91 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
SYNE1Q8NF91 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC7.9□□□□□ -1.15
SYNE1Q8NF91 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC7.89□□□□□ -1.15
SYNE1Q8NF91 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
SYNE1Q8NF91 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
SYNE1Q8NF91 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
SYNE1Q8NF91 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC7.89□□□□□ -1.15
SYNE1Q8NF91 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
SYNE1Q8NF91 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
SYNE1Q8NF91 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC7.88□□□□□ -1.15
SYNE1Q8NF91 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC7.88□□□□□ -1.15
SYNE1Q8NF91 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
SYNE1Q8NF91 RNF126P1-201ENST00000567452 1320 ntBASIC7.87□□□□□ -1.15
SYNE1Q8NF91 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
SYNE1Q8NF91 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC7.87□□□□□ -1.15
SYNE1Q8NF91 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
SYNE1Q8NF91 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
SYNE1Q8NF91 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
SYNE1Q8NF91 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 CHST11-202ENST00000546689 756 ntTSL 2 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 AC120057.4-201ENST00000624722 1615 ntBASIC7.86□□□□□ -1.15
SYNE1Q8NF91 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 ABHD17AP5-201ENST00000580133 923 ntBASIC7.86□□□□□ -1.15
SYNE1Q8NF91 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
SYNE1Q8NF91 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC7.85□□□□□ -1.15
SYNE1Q8NF91 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC7.84□□□□□ -1.15
SYNE1Q8NF91 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC7.84□□□□□ -1.15
SYNE1Q8NF91 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
SYNE1Q8NF91 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
SYNE1Q8NF91 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
SYNE1Q8NF91 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
SYNE1Q8NF91 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.16
SYNE1Q8NF91 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
SYNE1Q8NF91 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.16
SYNE1Q8NF91 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 TPT1-202ENST00000379055 948 ntTSL 2 BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 LINC00273-201ENST00000539813 1452 ntBASIC7.83□□□□□ -1.16
SYNE1Q8NF91 AC127502.1-201ENST00000399971 1502 ntBASIC7.83□□□□□ -1.16
SYNE1Q8NF91 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
SYNE1Q8NF91 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 EI24-212ENST00000615917 1407 ntTSL 2 BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 CEP120-209ENST00000515110 606 ntTSL 3 BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
SYNE1Q8NF91 AC139426.1-201ENST00000568218 2529 ntBASIC7.82□□□□□ -1.16
SYNE1Q8NF91 AC004987.1-201ENST00000428627 508 ntBASIC7.82□□□□□ -1.16
SYNE1Q8NF91 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms