Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TPM1P09493 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TPM1P09493 CREM-210ENST00000374721 2020 ntTSL 5 BASIC28.32■■■□□ 2.12
TPM1P09493 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.32■■■□□ 2.12
TPM1P09493 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.31■■■□□ 2.12
TPM1P09493 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.31■■■□□ 2.12
TPM1P09493 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
TPM1P09493 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
TPM1P09493 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.29■■■□□ 2.12
TPM1P09493 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
TPM1P09493 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
TPM1P09493 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
TPM1P09493 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
TPM1P09493 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
TPM1P09493 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
TPM1P09493 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
TPM1P09493 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
TPM1P09493 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
TPM1P09493 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
TPM1P09493 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
TPM1P09493 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
TPM1P09493 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
TPM1P09493 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
TPM1P09493 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
TPM1P09493 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
TPM1P09493 AL121749.1-202ENST00000609313 2153 ntBASIC28.24■■■□□ 2.11
TPM1P09493 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
TPM1P09493 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC28.23■■■□□ 2.11
TPM1P09493 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
TPM1P09493 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
TPM1P09493 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC28.22■■■□□ 2.11
TPM1P09493 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.21■■■□□ 2.11
TPM1P09493 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
TPM1P09493 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.11
TPM1P09493 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
TPM1P09493 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
TPM1P09493 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
TPM1P09493 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
TPM1P09493 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
TPM1P09493 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
TPM1P09493 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
TPM1P09493 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
TPM1P09493 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
TPM1P09493 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.19■■■□□ 2.1
TPM1P09493 AC135731.1-201ENST00000569415 2548 ntBASIC28.19■■■□□ 2.1
TPM1P09493 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
TPM1P09493 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
TPM1P09493 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
TPM1P09493 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
TPM1P09493 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.16■■■□□ 2.1
TPM1P09493 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
TPM1P09493 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
TPM1P09493 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
TPM1P09493 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
TPM1P09493 AP004833.2-201ENST00000532228 1454 ntBASIC28.15■■■□□ 2.1
TPM1P09493 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.15■■■□□ 2.1
TPM1P09493 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.15■■■□□ 2.1
TPM1P09493 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
TPM1P09493 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.14■■■□□ 2.1
TPM1P09493 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
TPM1P09493 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
TPM1P09493 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
TPM1P09493 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
TPM1P09493 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC28.13■■■□□ 2.09
TPM1P09493 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.13■■■□□ 2.09
TPM1P09493 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
TPM1P09493 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
TPM1P09493 SHF-207ENST00000560540 2062 ntTSL 5 BASIC28.12■■■□□ 2.09
TPM1P09493 BX255925.1-201ENST00000566954 1854 ntBASIC28.12■■■□□ 2.09
TPM1P09493 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
TPM1P09493 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
TPM1P09493 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.11■■■□□ 2.09
TPM1P09493 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.11■■■□□ 2.09
TPM1P09493 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
TPM1P09493 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
TPM1P09493 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.09■■■□□ 2.09
TPM1P09493 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
TPM1P09493 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
TPM1P09493 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
TPM1P09493 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
TPM1P09493 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
TPM1P09493 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
TPM1P09493 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
TPM1P09493 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
TPM1P09493 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
TPM1P09493 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.06■■■□□ 2.08
TPM1P09493 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC28.06■■■□□ 2.08
TPM1P09493 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC28.06■■■□□ 2.08
TPM1P09493 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
TPM1P09493 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
TPM1P09493 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
TPM1P09493 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
TPM1P09493 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
TPM1P09493 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
TPM1P09493 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.04■■■□□ 2.08
TPM1P09493 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.04■■■□□ 2.08
TPM1P09493 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
TPM1P09493 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC28.04■■■□□ 2.08
TPM1P09493 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.03■■■□□ 2.08
TPM1P09493 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms