Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL1P09341 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL1P09341 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.14■□□□□ 0.81
CXCL1P09341 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CXCL1P09341 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CXCL1P09341 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CXCL1P09341 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CXCL1P09341 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CXCL1P09341 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.12■□□□□ 0.81
CXCL1P09341 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
CXCL1P09341 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CXCL1P09341 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.11■□□□□ 0.81
CXCL1P09341 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL1P09341 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.11■□□□□ 0.81
CXCL1P09341 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
CXCL1P09341 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CXCL1P09341 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.1■□□□□ 0.81
CXCL1P09341 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CXCL1P09341 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL1P09341 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL1P09341 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CXCL1P09341 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL1P09341 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.07■□□□□ 0.8
CXCL1P09341 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL1P09341 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CXCL1P09341 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CXCL1P09341 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 AC093323.1-202ENST00000635031 2045 ntBASIC20.05■□□□□ 0.8
CXCL1P09341 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.05■□□□□ 0.8
CXCL1P09341 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.05■□□□□ 0.8
CXCL1P09341 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CXCL1P09341 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CXCL1P09341 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CXCL1P09341 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CXCL1P09341 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CXCL1P09341 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CXCL1P09341 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CXCL1P09341 AL139393.2-201ENST00000608721 2025 ntBASIC20.03■□□□□ 0.8
CXCL1P09341 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CXCL1P09341 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.02■□□□□ 0.8
CXCL1P09341 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CXCL1P09341 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CXCL1P09341 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CXCL1P09341 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CXCL1P09341 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20■□□□□ 0.79
CXCL1P09341 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CXCL1P09341 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CXCL1P09341 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CXCL1P09341 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CXCL1P09341 AL135925.1-201ENST00000605920 1701 ntBASIC19.99■□□□□ 0.79
CXCL1P09341 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CXCL1P09341 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CXCL1P09341 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CXCL1P09341 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.97■□□□□ 0.79
CXCL1P09341 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.97■□□□□ 0.79
CXCL1P09341 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.97■□□□□ 0.79
CXCL1P09341 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CXCL1P09341 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.96■□□□□ 0.79
CXCL1P09341 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CXCL1P09341 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CXCL1P09341 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CXCL1P09341 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CXCL1P09341 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CXCL1P09341 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CXCL1P09341 AC020928.2-201ENST00000588717 2197 ntBASIC19.95■□□□□ 0.78
CXCL1P09341 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.95■□□□□ 0.78
CXCL1P09341 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CXCL1P09341 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL1P09341 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.94■□□□□ 0.78
CXCL1P09341 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CXCL1P09341 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL1P09341 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL1P09341 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.92■□□□□ 0.78
CXCL1P09341 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL1P09341 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL1P09341 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL1P09341 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CXCL1P09341 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CXCL1P09341 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CXCL1P09341 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL1P09341 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.89■□□□□ 0.77
CXCL1P09341 BX255925.1-201ENST00000566954 1854 ntBASIC19.89■□□□□ 0.77
CXCL1P09341 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CXCL1P09341 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms