Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DRB4X5D2U9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DRB4X5D2U9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 AC138932.1-201ENST00000534164 6830 ntBASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DRB4X5D2U9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DRB4X5D2U9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 MIR663A-201ENST00000385250 93 ntBASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 AL512625.2-201ENST00000417533 625 ntBASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 AC133552.2-202ENST00000575694 574 ntBASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 RAP2CP1-201ENST00000605103 478 ntBASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DRB4X5D2U9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms