RNA–Protein interactions for RNA: ENST00000521253.1

TRIM35-203, Transcript of tripartite motif containing 35, humanhuman

TSL 1 (best) BASIC

Gene TRIM35, Length 1,215 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-203ENST00000521253 NISCHQ9Y2I1 1504 aa50.38■■■■■ 5.66
TRIM35-203ENST00000521253 CCDC180Q9P1Z9 1646 aa44.77■■■■■ 4.76
TRIM35-203ENST00000521253 ABCC9O60706 1549 aa44.04■■■■■ 4.64
TRIM35-203ENST00000521253 RB1CC1Q8TDY2 1594 aa42.24■■■■■ 4.35
TRIM35-203ENST00000521253 DCAF8L2P0C7V8 631 aa42.2■■■■■ 4.35
TRIM35-203ENST00000521253 NACADO15069 1562 aa42.17■■■■■ 4.34
TRIM35-203ENST00000521253 ZCCHC6Q5VYS8 1495 aaKnown RBP41.95■■■■■ 4.31
TRIM35-203ENST00000521253 MYO15BQ96JP2 1530 aa41.88■■■■■ 4.29
TRIM35-203ENST00000521253 DCAF1Q9Y4B6 1507 aa41.65■■■■■ 4.26
TRIM35-203ENST00000521253 UNC13AQ9UPW8 1703 aa41.22■■■■■ 4.19
TRIM35-203ENST00000521253 PABPN1Q86U42 306 aaKnown RBP eCLIP41.17■■■■■ 4.18
TRIM35-203ENST00000521253 BICRAQ9NZM4 1560 aa41■■■■■ 4.15
TRIM35-203ENST00000521253 SCRIBQ14160 1630 aa40.91■■■■■ 4.14
TRIM35-203ENST00000521253 DNAJC5BQ9UF47 199 aa40.59■■■■■ 4.09
TRIM35-203ENST00000521253 SHROOM4Q9ULL8 1493 aa40.52■■■■■ 4.08
TRIM35-203ENST00000521253 EIF4G1Q04637 1599 aaKnown RBP39.93■■■■□ 3.98
TRIM35-203ENST00000521253 CC2D2AQ9P2K1 1620 aa39.79■■■■□ 3.96
TRIM35-203ENST00000521253 CECR2Q9BXF3 1484 aa39.57■■■■□ 3.93
TRIM35-203ENST00000521253 SMARCA4P51532 1647 aa39.1■■■■□ 3.85
TRIM35-203ENST00000521253 BAZ1AQ9NRL2 1556 aaPredicted RBP39.04■■■■□ 3.84
TRIM35-203ENST00000521253 ATAD2BQ9ULI0 1458 aa38.96■■■■□ 3.83
TRIM35-203ENST00000521253 NCAPD3P42695 1498 aa38.95■■■■□ 3.83
TRIM35-203ENST00000521253 SMARCA2P51531 1590 aa38.87■■■■□ 3.81
TRIM35-203ENST00000521253 MROH2BQ7Z745 1585 aa38.84■■■■□ 3.81
TRIM35-203ENST00000521253 PEG3Q9GZU2 1588 aa38.72■■■■□ 3.79
TRIM35-203ENST00000521253 HMGXB3Q12766 1538 aa38.71■■■■□ 3.79
TRIM35-203ENST00000521253 BAZ1BQ9UIG0 1483 aaKnown RBP38.62■■■■□ 3.77
TRIM35-203ENST00000521253 WIZO95785 1651 aa38.38■■■■□ 3.73
TRIM35-203ENST00000521253 RSF1Q96T23 1441 aaPredicted RBP38.37■■■■□ 3.73
TRIM35-203ENST00000521253 NESP48681 1621 aa38.07■■■■□ 3.68
TRIM35-203ENST00000521253 TOP2AP11388 1531 aaKnown RBP37.97■■■■□ 3.67
TRIM35-203ENST00000521253 ERCC6Q03468 1493 aa37.95■■■■□ 3.67
TRIM35-203ENST00000521253 LAMC3Q9Y6N6 1575 aa37.9■■■■□ 3.66
TRIM35-203ENST00000521253 CADPSQ9ULU8 1353 aa37.82■■■■□ 3.65
TRIM35-203ENST00000521253 PDS5BQ9NTI5 1447 aa37.69■■■■□ 3.62
TRIM35-203ENST00000521253 CUX2O14529 1486 aa37.58■■■■□ 3.61
TRIM35-203ENST00000521253 CCDC88BA6NC98 1476 aa37.56■■■■□ 3.6
TRIM35-203ENST00000521253 CFTRP13569 1480 aa37.56■■■■□ 3.6
TRIM35-203ENST00000521253 KIF21AQ7Z4S6 1674 aa37.54■■■■□ 3.6
TRIM35-203ENST00000521253 THOC2Q8NI27 1593 aaKnown RBP37.47■■■■□ 3.59
TRIM35-203ENST00000521253 FANCD2Q9BXW9 1451 aa37.38■■■■□ 3.57
TRIM35-203ENST00000521253 CEP164Q9UPV0 1460 aa37.33■■■■□ 3.57
TRIM35-203ENST00000521253 SUPT5HO00267 1087 aaKnown RBP37.32■■■■□ 3.56
TRIM35-203ENST00000521253 MRC2Q9UBG0 1479 aa37.31■■■■□ 3.56
TRIM35-203ENST00000521253 WDR62O43379 1518 aa37.18■■■■□ 3.54
TRIM35-203ENST00000521253 PRDM2Q13029 1718 aa37.13■■■■□ 3.53
TRIM35-203ENST00000521253 URB2Q14146 1524 aaKnown RBP37.02■■■■□ 3.52
TRIM35-203ENST00000521253 TOPBP1Q92547 1522 aa36.76■■■■□ 3.48
TRIM35-203ENST00000521253 ABCC8Q09428 1581 aa36.72■■■■□ 3.47
TRIM35-203ENST00000521253 DNMBPQ6XZF7 1577 aa36.69■■■■□ 3.46
TRIM35-203ENST00000521253 DNAJC5Q9H3Z4 198 aa36.62■■■■□ 3.45
TRIM35-203ENST00000521253 IFT140Q96RY7 1462 aa36.56■■■■□ 3.44
TRIM35-203ENST00000521253 CUX1P39880 1505 aa36.44■■■■□ 3.42
TRIM35-203ENST00000521253 POLA1P09884 1462 aaPredicted RBP36.44■■■■□ 3.42
TRIM35-203ENST00000521253 ZNF608Q9ULD9 1512 aaPredicted RBP36.44■■■■□ 3.42
TRIM35-203ENST00000521253 TARBP1Q13395 1621 aaKnown RBP36.34■■■■□ 3.41
TRIM35-203ENST00000521253 FGD5Q6ZNL6 1462 aa36.34■■■■□ 3.41
TRIM35-203ENST00000521253 RAD54L2Q9Y4B4 1467 aa36.31■■■■□ 3.4
TRIM35-203ENST00000521253 SOGA1O94964 1423 aa36.3■■■■□ 3.4
TRIM35-203ENST00000521253 EIF4G3O43432 1585 aaKnown RBP36.23■■■■□ 3.39
TRIM35-203ENST00000521253 AQRO60306 1485 aaKnown RBP eCLIP36.22■■■■□ 3.392e-6■■■■■ 30.7
TRIM35-203ENST00000521253 WRNQ14191 1432 aaPredicted RBP eCLIP36.17■■■■□ 3.38
TRIM35-203ENST00000521253 TDRD9Q8NDG6 1382 aaKnown RBP36.14■■■■□ 3.38
TRIM35-203ENST00000521253 SYNJ1O43426 1573 aa36.07■■■■□ 3.37
TRIM35-203ENST00000521253 TOP2BQ02880 1626 aa36.06■■■■□ 3.36
TRIM35-203ENST00000521253 BIVM-ERCC5R4GMW8 1640 aa36.04■■■■□ 3.36
TRIM35-203ENST00000521253 OSCARQ8IYS5 282 aa36.03■■■■□ 3.36
TRIM35-203ENST00000521253 WDR97A6NE52 1622 aa36.01■■■■□ 3.36
TRIM35-203ENST00000521253 ABCA10Q8WWZ4 1543 aa35.98■■■■□ 3.35
TRIM35-203ENST00000521253 GRIN2BQ13224 1484 aa35.88■■■■□ 3.33
TRIM35-203ENST00000521253 GAPVD1Q14C86 1478 aa35.87■■■■□ 3.33
TRIM35-203ENST00000521253 SNAPC4Q5SXM2 1469 aa35.86■■■■□ 3.33
TRIM35-203ENST00000521253 ABCA5Q8WWZ7 1642 aa35.82■■■■□ 3.32
TRIM35-203ENST00000521253 FBLN2P98095 1184 aa35.81■■■■□ 3.32
TRIM35-203ENST00000521253 MAGI1Q96QZ7 1491 aaPredicted RBP35.79■■■■□ 3.32
TRIM35-203ENST00000521253 CHD1O14646 1710 aa35.76■■■■□ 3.31
TRIM35-203ENST00000521253 PBRM1Q86U86 1689 aa35.73■■■■□ 3.31
TRIM35-203ENST00000521253 CHMP7Q8WUX9 453 aaPredicted RBP35.68■■■■□ 3.3
TRIM35-203ENST00000521253 SYNJ2O15056 1496 aa35.67■■■■□ 3.3
TRIM35-203ENST00000521253 ERICH3Q5RHP9 1530 aa35.52■■■■□ 3.28
TRIM35-203ENST00000521253 ADAMTS12P58397 1594 aa35.5■■■■□ 3.27
TRIM35-203ENST00000521253 FHAD1B1AJZ9 1412 aa35.46■■■■□ 3.27
TRIM35-203ENST00000521253 ARHGEF11O15085 1522 aa35.43■■■■□ 3.26
TRIM35-203ENST00000521253 RIMBP3CA6NJZ7 1639 aa35.43■■■■□ 3.26
TRIM35-203ENST00000521253 RIMBP3BA6NNM3 1639 aa35.43■■■■□ 3.26
TRIM35-203ENST00000521253 RIMBP3Q9UFD9 1639 aa35.43■■■■□ 3.26
TRIM35-203ENST00000521253 CLASP1Q7Z460 1538 aa35.42■■■■□ 3.26
TRIM35-203ENST00000521253 GRIN2AQ12879 1464 aa35.42■■■■□ 3.26
TRIM35-203ENST00000521253 KIF27Q86VH2 1401 aa35.42■■■■□ 3.26
TRIM35-203ENST00000521253 TRIM41Q8WV44 630 aa35.39■■■■□ 3.26
TRIM35-203ENST00000521253 IGF1RP08069 1367 aa35.32■■■■□ 3.24
TRIM35-203ENST00000521253 NUP160Q12769 1436 aa35.28■■■■□ 3.24
TRIM35-203ENST00000521253 CEP170Q5SW79 1584 aa35.24■■■■□ 3.23
TRIM35-203ENST00000521253 ARAP1Q96P48 1450 aa35.16■■■■□ 3.22
TRIM35-203ENST00000521253 CYB5RLQ6IPT4 315 aa35.15■■■■□ 3.22
TRIM35-203ENST00000521253 CUL7Q14999 1698 aa35.14■■■■□ 3.22
TRIM35-203ENST00000521253 CARMIL1Q5VZK9 1371 aa35.1■■■■□ 3.21
TRIM35-203ENST00000521253 RUSC2Q8N2Y8 1516 aa35.08■■■■□ 3.21
TRIM35-203ENST00000521253 SHROOM2Q13796 1616 aa34.98■■■■□ 3.19
TRIM35-203ENST00000521253 ERCC6L2Q5T890 1561 aa34.96■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms