Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
HLA-DRB4X5D2U9 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DRB4X5D2U9 AL356512.1-201ENST00000607453 1739 ntBASIC24.63■■□□□ 1.53
HLA-DRB4X5D2U9 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.52
HLA-DRB4X5D2U9 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
HLA-DRB4X5D2U9 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HLA-DRB4X5D2U9 HES6-203ENST00000409160 1600 ntTSL 2 BASIC24.39■■□□□ 1.49
HLA-DRB4X5D2U9 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HLA-DRB4X5D2U9 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
HLA-DRB4X5D2U9 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC24.12■■□□□ 1.45
HLA-DRB4X5D2U9 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC24.11■■□□□ 1.45
HLA-DRB4X5D2U9 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC24.06■■□□□ 1.44
HLA-DRB4X5D2U9 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
HLA-DRB4X5D2U9 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC23.93■■□□□ 1.42
HLA-DRB4X5D2U9 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
HLA-DRB4X5D2U9 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HLA-DRB4X5D2U9 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
HLA-DRB4X5D2U9 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
HLA-DRB4X5D2U9 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HLA-DRB4X5D2U9 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
HLA-DRB4X5D2U9 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC23.29■■□□□ 1.32
HLA-DRB4X5D2U9 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
HLA-DRB4X5D2U9 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
HLA-DRB4X5D2U9 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
HLA-DRB4X5D2U9 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC23.13■■□□□ 1.29
HLA-DRB4X5D2U9 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
HLA-DRB4X5D2U9 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
HLA-DRB4X5D2U9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HLA-DRB4X5D2U9 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC23.05■■□□□ 1.28
HLA-DRB4X5D2U9 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HLA-DRB4X5D2U9 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC23.01■■□□□ 1.27
HLA-DRB4X5D2U9 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC22.97■■□□□ 1.27
HLA-DRB4X5D2U9 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
HLA-DRB4X5D2U9 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HLA-DRB4X5D2U9 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HLA-DRB4X5D2U9 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
HLA-DRB4X5D2U9 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
HLA-DRB4X5D2U9 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
HLA-DRB4X5D2U9 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.21
HLA-DRB4X5D2U9 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HLA-DRB4X5D2U9 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HLA-DRB4X5D2U9 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC22.58■■□□□ 1.21
HLA-DRB4X5D2U9 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HLA-DRB4X5D2U9 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC22.51■■□□□ 1.19
HLA-DRB4X5D2U9 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HLA-DRB4X5D2U9 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HLA-DRB4X5D2U9 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HLA-DRB4X5D2U9 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HLA-DRB4X5D2U9 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HLA-DRB4X5D2U9 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HLA-DRB4X5D2U9 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
HLA-DRB4X5D2U9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
HLA-DRB4X5D2U9 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC22.28■■□□□ 1.16
HLA-DRB4X5D2U9 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DRB4X5D2U9 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DRB4X5D2U9 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DRB4X5D2U9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC22.19■■□□□ 1.14
HLA-DRB4X5D2U9 INO80B-203ENST00000409917 796 ntTSL 2 BASIC22.18■■□□□ 1.14
HLA-DRB4X5D2U9 ILK-212ENST00000532063 1617 ntTSL 2 BASIC22.15■■□□□ 1.14
HLA-DRB4X5D2U9 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
HLA-DRB4X5D2U9 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HLA-DRB4X5D2U9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
HLA-DRB4X5D2U9 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
HLA-DRB4X5D2U9 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HLA-DRB4X5D2U9 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DRB4X5D2U9 AC015813.7-201ENST00000623294 581 ntBASIC21.98■■□□□ 1.11
HLA-DRB4X5D2U9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DRB4X5D2U9 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DRB4X5D2U9 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC21.92■■□□□ 1.1
HLA-DRB4X5D2U9 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DRB4X5D2U9 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HLA-DRB4X5D2U9 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC21.86■■□□□ 1.09
HLA-DRB4X5D2U9 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DRB4X5D2U9 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HLA-DRB4X5D2U9 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC21.85■■□□□ 1.09
HLA-DRB4X5D2U9 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HLA-DRB4X5D2U9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DRB4X5D2U9 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
HLA-DRB4X5D2U9 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC21.81■■□□□ 1.08
HLA-DRB4X5D2U9 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DRB4X5D2U9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DRB4X5D2U9 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
HLA-DRB4X5D2U9 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DRB4X5D2U9 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC21.72■■□□□ 1.07
HLA-DRB4X5D2U9 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HLA-DRB4X5D2U9 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
HLA-DRB4X5D2U9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DRB4X5D2U9 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DRB4X5D2U9 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DRB4X5D2U9 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DRB4X5D2U9 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DRB4X5D2U9 AC006077.2-201ENST00000623591 457 ntBASIC21.58■■□□□ 1.05
HLA-DRB4X5D2U9 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
HLA-DRB4X5D2U9 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DRB4X5D2U9 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DRB4X5D2U9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DRB4X5D2U9 AC145285.7-201ENST00000614819 1539 ntBASIC21.55■■□□□ 1.04
HLA-DRB4X5D2U9 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DRB4X5D2U9 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DRB4X5D2U9 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms