RNA–Protein interactions for RNA: ENST00000340829.9

CDK13-202, Transcript of cyclin dependent kinase 13, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CDK13, Length 5,066 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK13-202ENST00000340829 NISCHQ9Y2I1 1504 aa33.97■■■■□ 3.03
CDK13-202ENST00000340829 DCAF8L2P0C7V8 631 aa33.96■■■■□ 3.03
CDK13-202ENST00000340829 SUPT5HO00267 1087 aaKnown RBP32.64■■■□□ 2.82
CDK13-202ENST00000340829 SHROOM4Q9ULL8 1493 aa32.36■■■□□ 2.77
CDK13-202ENST00000340829 EHMT2Q96KQ7 1210 aa31.31■■■□□ 2.6
CDK13-202ENST00000340829 FAM9AQ8IZU1 332 aaPredicted RBP30.69■■■□□ 2.5
CDK13-202ENST00000340829 PCGF6Q9BYE7 350 aa30.46■■■□□ 2.47
CDK13-202ENST00000340829 APLP2Q06481 763 aa30.27■■■□□ 2.44
CDK13-202ENST00000340829 TTBK1Q5TCY1 1321 aaPredicted RBP30.24■■■□□ 2.43
CDK13-202ENST00000340829 TRIM41Q8WV44 630 aa30.19■■■□□ 2.42
CDK13-202ENST00000340829 RANGAP1P46060 587 aaPredicted RBP29.88■■■□□ 2.37
CDK13-202ENST00000340829 UBTFP17480 764 aaKnown RBP29.63■■■□□ 2.33
CDK13-202ENST00000340829 CCER1Q8TC90 406 aaPredicted RBP29.61■■■□□ 2.33
CDK13-202ENST00000340829 ZEB1P37275 1124 aaPredicted RBP29.58■■■□□ 2.33
CDK13-202ENST00000340829 PELP1Q8IZL8 1130 aaKnown RBP29.5■■■□□ 2.31
CDK13-202ENST00000340829 CHIC1Q5VXU3 224 aa29.46■■■□□ 2.31
CDK13-202ENST00000340829 PPARGC1BQ86YN6 1023 aaKnown RBP29.44■■■□□ 2.3
CDK13-202ENST00000340829 ATP1B4Q9UN42 357 aaPredicted RBP29.37■■■□□ 2.29
CDK13-202ENST00000340829 LOC105371045A0A1W2PR82 267 aa29.35■■■□□ 2.29
CDK13-202ENST00000340829 TRIM26Q12899 539 aaPredicted RBP29.23■■■□□ 2.27
CDK13-202ENST00000340829 CENPBP07199 599 aaPredicted RBP29.18■■■□□ 2.26
CDK13-202ENST00000340829 HRCP23327 699 aa29.07■■■□□ 2.24
CDK13-202ENST00000340829 YTHDC1Q96MU7 727 aaKnown RBP28.85■■■□□ 2.21
CDK13-202ENST00000340829 ABCC9O60706 1549 aa28.84■■■□□ 2.21
CDK13-202ENST00000340829 ITGAEP38570 1179 aa28.65■■■□□ 2.18
CDK13-202ENST00000340829 HNRNPUL2Q1KMD3 747 aaKnown RBP28.62■■■□□ 2.17
CDK13-202ENST00000340829 PABPN1Q86U42 306 aaKnown RBP eCLIP28.6■■■□□ 2.17
CDK13-202ENST00000340829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.45■■■□□ 2.14
CDK13-202ENST00000340829 NEFLP07196 543 aa28.36■■■□□ 2.13
CDK13-202ENST00000340829 ERICH6Q7L0X2 663 aa28.3■■■□□ 2.12
CDK13-202ENST00000340829 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
CDK13-202ENST00000340829 DIEXFQ68CQ4 756 aaKnown RBP28.05■■■□□ 2.08
CDK13-202ENST00000340829 POLR3GLQ9BT43 218 aa28.02■■■□□ 2.08
CDK13-202ENST00000340829 SCRIBQ14160 1630 aa27.97■■■□□ 2.07
CDK13-202ENST00000340829 FAM50AQ14320 339 aaKnown RBP27.96■■■□□ 2.07
CDK13-202ENST00000340829 MYT1LQ9UL68 1186 aa27.89■■■□□ 2.06
CDK13-202ENST00000340829 CNGB1Q14028 1251 aaPredicted RBP27.87■■■□□ 2.05
CDK13-202ENST00000340829 CSRNP3Q8WYN3 585 aa27.84■■■□□ 2.05
CDK13-202ENST00000340829 CCDC180Q9P1Z9 1646 aa27.8■■■□□ 2.04
CDK13-202ENST00000340829 NEUROD1Q13562 356 aa27.72■■■□□ 2.03
CDK13-202ENST00000340829 TRIM52Q96A61 297 aa27.65■■■□□ 2.02
CDK13-202ENST00000340829 P3H3Q8IVL6 736 aa27.57■■■□□ 2
CDK13-202ENST00000340829 DCAF1Q9Y4B6 1507 aa27.52■■■□□ 2
CDK13-202ENST00000340829 ZNF316A6NFI3 1004 aaPredicted RBP27.5■■□□□ 1.99
CDK13-202ENST00000340829 MYT1Q01538 1121 aa27.45■■□□□ 1.98
CDK13-202ENST00000340829 GTF3C3Q9Y5Q9 886 aa27.43■■□□□ 1.98
CDK13-202ENST00000340829 FBLN2P98095 1184 aa27.41■■□□□ 1.98
CDK13-202ENST00000340829 MYO15BQ96JP2 1530 aa27.39■■□□□ 1.98
CDK13-202ENST00000340829 ARID3CA6NKF2 412 aa27.36■■□□□ 1.97
CDK13-202ENST00000340829 ZNF326Q5BKZ1 582 aaKnown RBP27.31■■□□□ 1.96
CDK13-202ENST00000340829 RSF1Q96T23 1441 aaPredicted RBP27.28■■□□□ 1.96
CDK13-202ENST00000340829 SLC4A1APQ9BWU0 796 aaKnown RBP27.28■■□□□ 1.96
CDK13-202ENST00000340829 ANP32CO43423 234 aa27.26■■□□□ 1.95
CDK13-202ENST00000340829 BCANQ96GW7 911 aa27.24■■□□□ 1.95
CDK13-202ENST00000340829 DAXXQ9UER7 740 aaPredicted RBP27.22■■□□□ 1.95
CDK13-202ENST00000340829 ACIN1Q9UKV3 1341 aaKnown RBP27.15■■□□□ 1.94
CDK13-202ENST00000340829 RB1CC1Q8TDY2 1594 aa27.05■■□□□ 1.92
CDK13-202ENST00000340829 ZNF777Q9ULD5 760 aaPredicted RBP27.03■■□□□ 1.92
CDK13-202ENST00000340829 CLIP1P30622 1438 aa26.93■■□□□ 1.9
CDK13-202ENST00000340829 NACADO15069 1562 aa26.91■■□□□ 1.9
CDK13-202ENST00000340829 CDK11AQ9UQ88 783 aaPredicted RBP26.9■■□□□ 1.9
CDK13-202ENST00000340829 CLSPNQ9HAW4 1339 aa26.89■■□□□ 1.89
CDK13-202ENST00000340829 TONSLQ96HA7 1378 aa26.85■■□□□ 1.89
CDK13-202ENST00000340829 CEP162Q5TB80 1403 aa26.84■■□□□ 1.89
CDK13-202ENST00000340829 DDX10Q13206 875 aaKnown RBP26.78■■□□□ 1.88
CDK13-202ENST00000340829 CHIC2Q9UKJ5 165 aa26.78■■□□□ 1.88
CDK13-202ENST00000340829 WRNQ14191 1432 aaPredicted RBP eCLIP26.77■■□□□ 1.88
CDK13-202ENST00000340829 CECR2Q9BXF3 1484 aa26.77■■□□□ 1.88
CDK13-202ENST00000340829 GOLGA3Q08378 1498 aa26.77■■□□□ 1.88
CDK13-202ENST00000340829 EEA1Q15075 1411 aa26.77■■□□□ 1.88
CDK13-202ENST00000340829 RTL5Q5HYW3 569 aaPredicted RBP26.73■■□□□ 1.87
CDK13-202ENST00000340829 BAZ1BQ9UIG0 1483 aaKnown RBP26.67■■□□□ 1.86
CDK13-202ENST00000340829 MTUS2Q5JR59 1369 aa26.65■■□□□ 1.86
CDK13-202ENST00000340829 TNIKQ9UKE5 1360 aa26.62■■□□□ 1.85
CDK13-202ENST00000340829 BAZ1AQ9NRL2 1556 aaPredicted RBP26.61■■□□□ 1.85
CDK13-202ENST00000340829 MIER1Q8N108 512 aa26.6■■□□□ 1.85
CDK13-202ENST00000340829 FKBP8Q14318 412 aa26.58■■□□□ 1.85
CDK13-202ENST00000340829 HNRNPUQ00839 825 aaKnown RBP eCLIP26.56■■□□□ 1.84
CDK13-202ENST00000340829 HIRIP3Q9BW71 556 aaPredicted RBP26.54■■□□□ 1.84
CDK13-202ENST00000340829 CEP164Q9UPV0 1460 aa26.51■■□□□ 1.83
CDK13-202ENST00000340829 FAM9BQ8IZU0 186 aa26.5■■□□□ 1.83
CDK13-202ENST00000340829 SCAF1Q9H7N4 1312 aaKnown RBP26.47■■□□□ 1.83
CDK13-202ENST00000340829 KIF27Q86VH2 1401 aa26.46■■□□□ 1.83
CDK13-202ENST00000340829 CANXP27824 592 aaKnown RBP26.46■■□□□ 1.83
CDK13-202ENST00000340829 RRP7BPQ9NSQ0 103 aa26.44■■□□□ 1.82
CDK13-202ENST00000340829 CHMP7Q8WUX9 453 aaPredicted RBP26.43■■□□□ 1.82
CDK13-202ENST00000340829 SOGA1O94964 1423 aa26.43■■□□□ 1.82
CDK13-202ENST00000340829 MROH2BQ7Z745 1585 aa26.42■■□□□ 1.82
CDK13-202ENST00000340829 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.42■■□□□ 1.821e-6■□□□□ 10.5
CDK13-202ENST00000340829 CHGAP10645 457 aaKnown RBP26.38■■□□□ 1.81
CDK13-202ENST00000340829 TSPY4P0CV99 314 aa26.37■■□□□ 1.81
CDK13-202ENST00000340829 TSPY10P0CW01 314 aa26.37■■□□□ 1.81
CDK13-202ENST00000340829 KDM2AQ9Y2K7 1162 aa26.34■■□□□ 1.81
CDK13-202ENST00000340829 SALL2Q9Y467 1007 aaPredicted RBP26.32■■□□□ 1.8
CDK13-202ENST00000340829 BCL11AQ9H165 835 aa26.3■■□□□ 1.8
CDK13-202ENST00000340829 MRS2Q9HD23 443 aa26.27■■□□□ 1.8
CDK13-202ENST00000340829 CCDC88BA6NC98 1476 aa26.26■■□□□ 1.79
CDK13-202ENST00000340829 NEFMP07197 916 aa26.26■■□□□ 1.79
CDK13-202ENST00000340829 TMC1Q8TDI8 760 aa26.26■■□□□ 1.79
CDK13-202ENST00000340829 ZBTB47Q9UFB7 747 aaPredicted RBP26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms