Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CKS1BP61024 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.99□□□□□ -0.17
CKS1BP61024 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CKS1BP61024 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
CKS1BP61024 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 AC006128.1-201ENST00000624704 1661 ntBASIC13.98□□□□□ -0.17
CKS1BP61024 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.98□□□□□ -0.17
CKS1BP61024 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC13.98□□□□□ -0.17
CKS1BP61024 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC13.98□□□□□ -0.17
CKS1BP61024 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CKS1BP61024 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
CKS1BP61024 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CKS1BP61024 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CKS1BP61024 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC13.98□□□□□ -0.17
CKS1BP61024 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CKS1BP61024 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
CKS1BP61024 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 AC012313.1-201ENST00000593393 3059 ntBASIC13.97□□□□□ -0.17
CKS1BP61024 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
CKS1BP61024 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 ME2-216ENST00000639850 2331 ntTSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 AP006587.3-201ENST00000525742 1516 ntBASIC13.97□□□□□ -0.17
CKS1BP61024 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC13.97□□□□□ -0.17
CKS1BP61024 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CKS1BP61024 PALM-207ENST00000590161 2137 ntTSL 4 BASIC13.97□□□□□ -0.17
CKS1BP61024 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CKS1BP61024 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.97□□□□□ -0.17
CKS1BP61024 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC13.97□□□□□ -0.17
CKS1BP61024 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CKS1BP61024 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC13.96□□□□□ -0.17
CKS1BP61024 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC13.96□□□□□ -0.17
CKS1BP61024 AC007613.1-201ENST00000572811 2597 ntBASIC13.96□□□□□ -0.17
CKS1BP61024 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC13.96□□□□□ -0.17
CKS1BP61024 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
CKS1BP61024 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
CKS1BP61024 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC13.96□□□□□ -0.17
CKS1BP61024 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC13.96□□□□□ -0.17
CKS1BP61024 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CKS1BP61024 TNXA-203ENST00000507684 2038 ntBASIC13.96□□□□□ -0.17
CKS1BP61024 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms