Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF40O75150 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF40O75150 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RNF40O75150 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.57■■□□□ 1.04
RNF40O75150 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.57■■□□□ 1.04
RNF40O75150 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
RNF40O75150 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF40O75150 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.57■■□□□ 1.04
RNF40O75150 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.57■■□□□ 1.04
RNF40O75150 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
RNF40O75150 AC120498.10-201ENST00000621827 505 ntBASIC21.57■■□□□ 1.04
RNF40O75150 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.57■■□□□ 1.04
RNF40O75150 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
RNF40O75150 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
RNF40O75150 PLK5-205ENST00000642079 1969 ntBASIC21.57■■□□□ 1.04
RNF40O75150 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.57■■□□□ 1.04
RNF40O75150 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF40O75150 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RNF40O75150 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RNF40O75150 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF40O75150 BX323043.1-201ENST00000641006 1765 ntBASIC21.56■■□□□ 1.04
RNF40O75150 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF40O75150 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.56■■□□□ 1.04
RNF40O75150 KRT18P29-201ENST00000397031 1267 ntBASIC21.56■■□□□ 1.04
RNF40O75150 AC093827.2-201ENST00000512654 315 ntBASIC21.56■■□□□ 1.04
RNF40O75150 AC008175.2-201ENST00000612840 297 ntBASIC21.56■■□□□ 1.04
RNF40O75150 ITM2C-210ENST00000620962 501 ntBASIC21.56■■□□□ 1.04
RNF40O75150 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.56■■□□□ 1.04
RNF40O75150 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.56■■□□□ 1.04
RNF40O75150 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF40O75150 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF40O75150 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF40O75150 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.56■■□□□ 1.04
RNF40O75150 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.55■■□□□ 1.04
RNF40O75150 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.55■■□□□ 1.04
RNF40O75150 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
RNF40O75150 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.55■■□□□ 1.04
RNF40O75150 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
RNF40O75150 AL512625.2-201ENST00000417533 625 ntBASIC21.55■■□□□ 1.04
RNF40O75150 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.55■■□□□ 1.04
RNF40O75150 AC092118.2-201ENST00000613495 667 ntBASIC21.55■■□□□ 1.04
RNF40O75150 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
RNF40O75150 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.55■■□□□ 1.04
RNF40O75150 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
RNF40O75150 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF40O75150 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RNF40O75150 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.54■■□□□ 1.04
RNF40O75150 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.54■■□□□ 1.04
RNF40O75150 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.54■■□□□ 1.04
RNF40O75150 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.54■■□□□ 1.04
RNF40O75150 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF40O75150 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF40O75150 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RNF40O75150 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF40O75150 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF40O75150 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF40O75150 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
RNF40O75150 AC020907.5-201ENST00000624372 1936 ntBASIC21.53■■□□□ 1.04
RNF40O75150 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF40O75150 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.53■■□□□ 1.04
RNF40O75150 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
RNF40O75150 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
RNF40O75150 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF40O75150 BX276092.2-201ENST00000417668 665 ntBASIC21.53■■□□□ 1.04
RNF40O75150 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF40O75150 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF40O75150 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
RNF40O75150 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.53■■□□□ 1.04
RNF40O75150 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF40O75150 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF40O75150 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF40O75150 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.53■■□□□ 1.04
RNF40O75150 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF40O75150 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.52■■□□□ 1.04
RNF40O75150 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF40O75150 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF40O75150 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF40O75150 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
RNF40O75150 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF40O75150 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF40O75150 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms