RNA–Protein interactions for RNA: ENST00000369592.1

SMNDC1-201, Transcript of survival motor neuron domain containing 1, humanhuman

APPRIS P1 TSL 3 BASIC

Gene SMNDC1, Length 1,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-201ENST00000369592 NISCHQ9Y2I1 1504 aa50.71■■■■■ 5.71
SMNDC1-201ENST00000369592 CCDC180Q9P1Z9 1646 aa45.21■■■■■ 4.83
SMNDC1-201ENST00000369592 ABCC9O60706 1549 aa44.39■■■■■ 4.7
SMNDC1-201ENST00000369592 RB1CC1Q8TDY2 1594 aa42.61■■■■■ 4.41
SMNDC1-201ENST00000369592 NACADO15069 1562 aa42.55■■■■■ 4.4
SMNDC1-201ENST00000369592 MYO15BQ96JP2 1530 aa42.3■■■■■ 4.36
SMNDC1-201ENST00000369592 DNAJC5BQ9UF47 199 aa42.28■■■■■ 4.36
SMNDC1-201ENST00000369592 DCAF8L2P0C7V8 631 aa42.21■■■■■ 4.35
SMNDC1-201ENST00000369592 ZCCHC6Q5VYS8 1495 aaKnown RBP42.19■■■■■ 4.34
SMNDC1-201ENST00000369592 DCAF1Q9Y4B6 1507 aa42■■■■■ 4.31
SMNDC1-201ENST00000369592 UNC13AQ9UPW8 1703 aa41.75■■■■■ 4.27
SMNDC1-201ENST00000369592 BICRAQ9NZM4 1560 aa41.46■■■■■ 4.23
SMNDC1-201ENST00000369592 PABPN1Q86U42 306 aaKnown RBP eCLIP41.41■■■■■ 4.22
SMNDC1-201ENST00000369592 SCRIBQ14160 1630 aa41.12■■■■■ 4.17
SMNDC1-201ENST00000369592 SHROOM4Q9ULL8 1493 aa40.96■■■■■ 4.15
SMNDC1-201ENST00000369592 EIF4G1Q04637 1599 aaKnown RBP40.31■■■■■ 4.04
SMNDC1-201ENST00000369592 CC2D2AQ9P2K1 1620 aa40.2■■■■■ 4.03
SMNDC1-201ENST00000369592 CECR2Q9BXF3 1484 aa40■■■■□ 3.99
SMNDC1-201ENST00000369592 DNAJC5Q9H3Z4 198 aa39.44■■■■□ 3.9
SMNDC1-201ENST00000369592 SMARCA4P51532 1647 aa39.39■■■■□ 3.9
SMNDC1-201ENST00000369592 NCAPD3P42695 1498 aa39.3■■■■□ 3.88
SMNDC1-201ENST00000369592 BAZ1AQ9NRL2 1556 aaPredicted RBP39.28■■■■□ 3.88
SMNDC1-201ENST00000369592 ATAD2BQ9ULI0 1458 aa39.25■■■■□ 3.87
SMNDC1-201ENST00000369592 SMARCA2P51531 1590 aa39.15■■■■□ 3.86
SMNDC1-201ENST00000369592 PEG3Q9GZU2 1588 aa39.08■■■■□ 3.85
SMNDC1-201ENST00000369592 MROH2BQ7Z745 1585 aa39.07■■■■□ 3.84
SMNDC1-201ENST00000369592 HMGXB3Q12766 1538 aa39.06■■■■□ 3.84
SMNDC1-201ENST00000369592 BAZ1BQ9UIG0 1483 aaKnown RBP38.84■■■■□ 3.81
SMNDC1-201ENST00000369592 WIZO95785 1651 aa38.61■■■■□ 3.77
SMNDC1-201ENST00000369592 RSF1Q96T23 1441 aaPredicted RBP38.53■■■■□ 3.76
SMNDC1-201ENST00000369592 CUX2O14529 1486 aa38.53■■■■□ 3.76
SMNDC1-201ENST00000369592 NESP48681 1621 aa38.38■■■■□ 3.74
SMNDC1-201ENST00000369592 ERCC6Q03468 1493 aa38.34■■■■□ 3.73
SMNDC1-201ENST00000369592 LAMC3Q9Y6N6 1575 aa38.26■■■■□ 3.72
SMNDC1-201ENST00000369592 TOP2AP11388 1531 aaKnown RBP38.18■■■■□ 3.7
SMNDC1-201ENST00000369592 CADPSQ9ULU8 1353 aa38.09■■■■□ 3.69
SMNDC1-201ENST00000369592 PDS5BQ9NTI5 1447 aa37.95■■■■□ 3.67
SMNDC1-201ENST00000369592 KIF21AQ7Z4S6 1674 aa37.92■■■■□ 3.66
SMNDC1-201ENST00000369592 THOC2Q8NI27 1593 aaKnown RBP37.9■■■■□ 3.66
SMNDC1-201ENST00000369592 CFTRP13569 1480 aa37.84■■■■□ 3.65
SMNDC1-201ENST00000369592 CCDC88BA6NC98 1476 aa37.74■■■■□ 3.63
SMNDC1-201ENST00000369592 FANCD2Q9BXW9 1451 aa37.62■■■■□ 3.61
SMNDC1-201ENST00000369592 MRC2Q9UBG0 1479 aa37.61■■■■□ 3.61
SMNDC1-201ENST00000369592 CEP164Q9UPV0 1460 aa37.58■■■■□ 3.61
SMNDC1-201ENST00000369592 WDR62O43379 1518 aa37.55■■■■□ 3.6
SMNDC1-201ENST00000369592 PRDM2Q13029 1718 aa37.53■■■■□ 3.6
SMNDC1-201ENST00000369592 TRIM41Q8WV44 630 aa37.44■■■■□ 3.58
SMNDC1-201ENST00000369592 URB2Q14146 1524 aaKnown RBP37.31■■■■□ 3.56
SMNDC1-201ENST00000369592 SUPT5HO00267 1087 aaKnown RBP37.15■■■■□ 3.54
SMNDC1-201ENST00000369592 TOPBP1Q92547 1522 aa37.02■■■■□ 3.52
SMNDC1-201ENST00000369592 ABCC8Q09428 1581 aa36.98■■■■□ 3.51
SMNDC1-201ENST00000369592 DNMBPQ6XZF7 1577 aa36.95■■■■□ 3.51
SMNDC1-201ENST00000369592 IFT140Q96RY7 1462 aa36.83■■■■□ 3.49
SMNDC1-201ENST00000369592 ZNF608Q9ULD9 1512 aaPredicted RBP36.71■■■■□ 3.47
SMNDC1-201ENST00000369592 TARBP1Q13395 1621 aaKnown RBP36.7■■■■□ 3.47
SMNDC1-201ENST00000369592 POLA1P09884 1462 aaPredicted RBP36.69■■■■□ 3.46
SMNDC1-201ENST00000369592 CUX1P39880 1505 aa36.66■■■■□ 3.46
SMNDC1-201ENST00000369592 OSCARQ8IYS5 282 aa36.57■■■■□ 3.44
SMNDC1-201ENST00000369592 FGD5Q6ZNL6 1462 aa36.54■■■■□ 3.44
SMNDC1-201ENST00000369592 EIF4G3O43432 1585 aaKnown RBP36.53■■■■□ 3.44
SMNDC1-201ENST00000369592 RAD54L2Q9Y4B4 1467 aa36.51■■■■□ 3.44
SMNDC1-201ENST00000369592 SOGA1O94964 1423 aa36.49■■■■□ 3.43
SMNDC1-201ENST00000369592 AQRO60306 1485 aaKnown RBP eCLIP36.44■■■■□ 3.425e-8■■■■■ 37.7
SMNDC1-201ENST00000369592 WDR97A6NE52 1622 aa36.36■■■■□ 3.41
SMNDC1-201ENST00000369592 TDRD9Q8NDG6 1382 aaKnown RBP36.31■■■■□ 3.4
SMNDC1-201ENST00000369592 BIVM-ERCC5R4GMW8 1640 aa36.28■■■■□ 3.4
SMNDC1-201ENST00000369592 TOP2BQ02880 1626 aa36.27■■■■□ 3.4
SMNDC1-201ENST00000369592 WRNQ14191 1432 aaPredicted RBP eCLIP36.26■■■■□ 3.4
SMNDC1-201ENST00000369592 SYNJ1O43426 1573 aa36.24■■■■□ 3.39
SMNDC1-201ENST00000369592 RIMBP3CA6NJZ7 1639 aa36.24■■■■□ 3.39
SMNDC1-201ENST00000369592 RIMBP3BA6NNM3 1639 aa36.24■■■■□ 3.39
SMNDC1-201ENST00000369592 RIMBP3Q9UFD9 1639 aa36.24■■■■□ 3.39
SMNDC1-201ENST00000369592 ABCA10Q8WWZ4 1543 aa36.22■■■■□ 3.39
SMNDC1-201ENST00000369592 CHD1O14646 1710 aa36.14■■■■□ 3.38
SMNDC1-201ENST00000369592 GRIN2BQ13224 1484 aa36.11■■■■□ 3.37
SMNDC1-201ENST00000369592 ABCA5Q8WWZ7 1642 aa36.1■■■■□ 3.37
SMNDC1-201ENST00000369592 SNAPC4Q5SXM2 1469 aa36.08■■■■□ 3.37
SMNDC1-201ENST00000369592 GAPVD1Q14C86 1478 aa36.07■■■■□ 3.37
SMNDC1-201ENST00000369592 ARHGEF11O15085 1522 aa36.07■■■■□ 3.36
SMNDC1-201ENST00000369592 MAGI1Q96QZ7 1491 aaPredicted RBP36.05■■■■□ 3.36
SMNDC1-201ENST00000369592 PBRM1Q86U86 1689 aa36.03■■■■□ 3.36
SMNDC1-201ENST00000369592 SYNJ2O15056 1496 aa35.92■■■■□ 3.34
SMNDC1-201ENST00000369592 FBLN2P98095 1184 aa35.9■■■■□ 3.34
SMNDC1-201ENST00000369592 CHMP7Q8WUX9 453 aaPredicted RBP35.82■■■■□ 3.32
SMNDC1-201ENST00000369592 CYB5RLQ6IPT4 315 aa35.81■■■■□ 3.32
SMNDC1-201ENST00000369592 CLASP1Q7Z460 1538 aa35.79■■■■□ 3.32
SMNDC1-201ENST00000369592 ERICH3Q5RHP9 1530 aa35.76■■■■□ 3.31
SMNDC1-201ENST00000369592 ADAMTS12P58397 1594 aa35.75■■■■□ 3.31
SMNDC1-201ENST00000369592 TRHP20396 242 aaPredicted RBP35.72■■■■□ 3.31
SMNDC1-201ENST00000369592 GRIN2AQ12879 1464 aa35.66■■■■□ 3.3
SMNDC1-201ENST00000369592 ARAP1Q96P48 1450 aa35.66■■■■□ 3.3
SMNDC1-201ENST00000369592 FHAD1B1AJZ9 1412 aa35.66■■■■□ 3.3
SMNDC1-201ENST00000369592 NUP160Q12769 1436 aa35.57■■■■□ 3.28
SMNDC1-201ENST00000369592 CEP170Q5SW79 1584 aa35.51■■■■□ 3.28
SMNDC1-201ENST00000369592 KIF27Q86VH2 1401 aa35.51■■■■□ 3.28
SMNDC1-201ENST00000369592 IGF1RP08069 1367 aa35.49■■■■□ 3.27
SMNDC1-201ENST00000369592 CUL7Q14999 1698 aa35.36■■■■□ 3.25
SMNDC1-201ENST00000369592 SHROOM2Q13796 1616 aa35.35■■■■□ 3.25
SMNDC1-201ENST00000369592 AEBP2Q6ZN18 517 aaPredicted RBP35.31■■■■□ 3.24
SMNDC1-201ENST00000369592 ERCC6L2Q5T890 1561 aa35.26■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms