Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
SGCEO43556 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SGCEO43556 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.71■□□□□ 0.43
SGCEO43556 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.71■□□□□ 0.43
SGCEO43556 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SGCEO43556 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SGCEO43556 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SGCEO43556 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.7■□□□□ 0.42
SGCEO43556 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.7■□□□□ 0.42
SGCEO43556 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.7■□□□□ 0.42
SGCEO43556 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.7■□□□□ 0.42
SGCEO43556 AIRN-201ENST00000601203 4374 ntBASIC17.7■□□□□ 0.42
SGCEO43556 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.7■□□□□ 0.42
SGCEO43556 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.7■□□□□ 0.42
SGCEO43556 CDCA4P2-201ENST00000441182 718 ntBASIC17.7■□□□□ 0.42
SGCEO43556 AC026185.1-201ENST00000445748 174 ntBASIC17.7■□□□□ 0.42
SGCEO43556 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
SGCEO43556 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
SGCEO43556 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.7■□□□□ 0.42
SGCEO43556 AL162377.1-201ENST00000618844 1793 ntBASIC17.7■□□□□ 0.42
SGCEO43556 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SGCEO43556 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SGCEO43556 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
SGCEO43556 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SGCEO43556 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SGCEO43556 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SGCEO43556 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.69■□□□□ 0.42
SGCEO43556 DPP3P2-201ENST00000416030 1696 ntBASIC17.69■□□□□ 0.42
SGCEO43556 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 KRT18P68-201ENST00000392293 1000 ntBASIC17.69■□□□□ 0.42
SGCEO43556 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.69■□□□□ 0.42
SGCEO43556 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.69■□□□□ 0.42
SGCEO43556 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
SGCEO43556 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
SGCEO43556 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SGCEO43556 SMG8-203ENST00000578922 2178 ntBASIC17.69■□□□□ 0.42
SGCEO43556 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.68■□□□□ 0.42
SGCEO43556 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.68■□□□□ 0.42
SGCEO43556 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SGCEO43556 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 AL512625.2-201ENST00000417533 625 ntBASIC17.68■□□□□ 0.42
SGCEO43556 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.68■□□□□ 0.42
SGCEO43556 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.68■□□□□ 0.42
SGCEO43556 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SGCEO43556 AC010980.2-201ENST00000587099 1412 ntBASIC17.68■□□□□ 0.42
SGCEO43556 CYP2T3P-201ENST00000601990 817 ntBASIC17.68■□□□□ 0.42
SGCEO43556 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.68■□□□□ 0.42
SGCEO43556 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SGCEO43556 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
SGCEO43556 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms