Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 AC007613.1-201ENST00000572811 2597 ntBASIC14.67□□□□□ -0.06
SMKR1H3BMG3 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 AC009237.3-201ENST00000393279 1427 ntBASIC14.66□□□□□ -0.06
SMKR1H3BMG3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 AC136469.2-201ENST00000623944 1028 ntBASIC14.66□□□□□ -0.06
SMKR1H3BMG3 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SMKR1H3BMG3 PWWP2AP1-201ENST00000429776 2273 ntBASIC14.66□□□□□ -0.06
SMKR1H3BMG3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 AP004607.4-201ENST00000530158 1459 ntBASIC14.65□□□□□ -0.06
SMKR1H3BMG3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 FXN-202ENST00000396364 980 ntTSL 5 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 TMEM179-206ENST00000616017 1645 ntBASIC14.65□□□□□ -0.06
SMKR1H3BMG3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
SMKR1H3BMG3 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.07
SMKR1H3BMG3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 TREX1-205ENST00000625293 1783 ntBASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 LETM1P2-201ENST00000597330 2178 ntBASIC14.64□□□□□ -0.07
SMKR1H3BMG3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SMKR1H3BMG3 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms