RNA–Protein interactions for RNA: ENST00000395860.6

VCPKMT-202, Transcript of valosin containing protein lysine methyltransferase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCPKMT, Length 1,761 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-202ENST00000395860 NISCHQ9Y2I1 1504 aa47.15■■■■■ 5.14
VCPKMT-202ENST00000395860 CCDC180Q9P1Z9 1646 aa41.4■■■■■ 4.22
VCPKMT-202ENST00000395860 ZCCHC6Q5VYS8 1495 aaKnown RBP39.53■■■■□ 3.92
VCPKMT-202ENST00000395860 ABCC9O60706 1549 aa39.4■■■■□ 3.9
VCPKMT-202ENST00000395860 DCAF8L2P0C7V8 631 aa39.04■■■■□ 3.84
VCPKMT-202ENST00000395860 DCAF1Q9Y4B6 1507 aa39■■■■□ 3.83
VCPKMT-202ENST00000395860 MYO15BQ96JP2 1530 aa38.69■■■■□ 3.78
VCPKMT-202ENST00000395860 NACADO15069 1562 aa38.6■■■■□ 3.77
VCPKMT-202ENST00000395860 RB1CC1Q8TDY2 1594 aa38.38■■■■□ 3.73
VCPKMT-202ENST00000395860 SHROOM4Q9ULL8 1493 aa38.14■■■■□ 3.7
VCPKMT-202ENST00000395860 SCRIBQ14160 1630 aa37.95■■■■□ 3.67
VCPKMT-202ENST00000395860 UNC13AQ9UPW8 1703 aa37.64■■■■□ 3.62
VCPKMT-202ENST00000395860 BICRAQ9NZM4 1560 aa37.18■■■■□ 3.54
VCPKMT-202ENST00000395860 PABPN1Q86U42 306 aaKnown RBP eCLIP37.03■■■■□ 3.52
VCPKMT-202ENST00000395860 CECR2Q9BXF3 1484 aa36.63■■■■□ 3.46
VCPKMT-202ENST00000395860 SUPT5HO00267 1087 aaKnown RBP36.5■■■■□ 3.43
VCPKMT-202ENST00000395860 BAZ1AQ9NRL2 1556 aaPredicted RBP36.47■■■■□ 3.43
VCPKMT-202ENST00000395860 MROH2BQ7Z745 1585 aa36.4■■■■□ 3.42
VCPKMT-202ENST00000395860 RSF1Q96T23 1441 aaPredicted RBP36.38■■■■□ 3.41
VCPKMT-202ENST00000395860 SMARCA4P51532 1647 aa36.37■■■■□ 3.41
VCPKMT-202ENST00000395860 WIZO95785 1651 aa36.13■■■■□ 3.37
VCPKMT-202ENST00000395860 EIF4G1Q04637 1599 aaKnown RBP36.11■■■■□ 3.37
VCPKMT-202ENST00000395860 PEG3Q9GZU2 1588 aa35.92■■■■□ 3.34
VCPKMT-202ENST00000395860 SMARCA2P51531 1590 aa35.84■■■■□ 3.33
VCPKMT-202ENST00000395860 ATAD2BQ9ULI0 1458 aa35.81■■■■□ 3.32
VCPKMT-202ENST00000395860 TOP2AP11388 1531 aaKnown RBP35.73■■■■□ 3.31
VCPKMT-202ENST00000395860 CC2D2AQ9P2K1 1620 aa35.69■■■■□ 3.3
VCPKMT-202ENST00000395860 BAZ1BQ9UIG0 1483 aaKnown RBP35.62■■■■□ 3.29
VCPKMT-202ENST00000395860 NCAPD3P42695 1498 aa35.58■■■■□ 3.29
VCPKMT-202ENST00000395860 HMGXB3Q12766 1538 aa35.54■■■■□ 3.28
VCPKMT-202ENST00000395860 CCDC88BA6NC98 1476 aa35.32■■■■□ 3.25
VCPKMT-202ENST00000395860 DNAJC5BQ9UF47 199 aa35.02■■■■□ 3.2
VCPKMT-202ENST00000395860 CHIC1Q5VXU3 224 aa34.71■■■■□ 3.15
VCPKMT-202ENST00000395860 CFTRP13569 1480 aa34.68■■■■□ 3.14
VCPKMT-202ENST00000395860 PRDM2Q13029 1718 aa34.63■■■■□ 3.13
VCPKMT-202ENST00000395860 CADPSQ9ULU8 1353 aa34.63■■■■□ 3.13
VCPKMT-202ENST00000395860 LAMC3Q9Y6N6 1575 aa34.49■■■■□ 3.11
VCPKMT-202ENST00000395860 ABCC8Q09428 1581 aa34.48■■■■□ 3.11
VCPKMT-202ENST00000395860 NESP48681 1621 aa34.46■■■■□ 3.11
VCPKMT-202ENST00000395860 TRIM41Q8WV44 630 aa34.37■■■■□ 3.09
VCPKMT-202ENST00000395860 WRNQ14191 1432 aaPredicted RBP eCLIP34.29■■■■□ 3.08
VCPKMT-202ENST00000395860 FANCD2Q9BXW9 1451 aa34.27■■■■□ 3.08
VCPKMT-202ENST00000395860 PDS5BQ9NTI5 1447 aa34.2■■■■□ 3.07
VCPKMT-202ENST00000395860 SYNJ1O43426 1573 aa34.18■■■■□ 3.06
VCPKMT-202ENST00000395860 KIF21AQ7Z4S6 1674 aa34.13■■■■□ 3.05
VCPKMT-202ENST00000395860 CEP164Q9UPV0 1460 aa34.11■■■■□ 3.05
VCPKMT-202ENST00000395860 TOP2BQ02880 1626 aa34.1■■■■□ 3.05
VCPKMT-202ENST00000395860 BIVM-ERCC5R4GMW8 1640 aa34.1■■■■□ 3.05
VCPKMT-202ENST00000395860 CUX1P39880 1505 aa34.07■■■■□ 3.04
VCPKMT-202ENST00000395860 DNMBPQ6XZF7 1577 aa33.92■■■■□ 3.02
VCPKMT-202ENST00000395860 TOPBP1Q92547 1522 aa33.86■■■■□ 3.01
VCPKMT-202ENST00000395860 URB2Q14146 1524 aaKnown RBP33.85■■■■□ 3.01
VCPKMT-202ENST00000395860 ERCC6Q03468 1493 aa33.85■■■■□ 3.01
VCPKMT-202ENST00000395860 MRC2Q9UBG0 1479 aa33.79■■■■□ 3
VCPKMT-202ENST00000395860 FGD5Q6ZNL6 1462 aa33.77■■■■□ 3
VCPKMT-202ENST00000395860 SOGA1O94964 1423 aa33.7■■■□□ 2.99
VCPKMT-202ENST00000395860 FAM9AQ8IZU1 332 aaPredicted RBP33.7■■■□□ 2.99
VCPKMT-202ENST00000395860 POLA1P09884 1462 aaPredicted RBP33.65■■■□□ 2.98
VCPKMT-202ENST00000395860 THOC2Q8NI27 1593 aaKnown RBP33.65■■■□□ 2.98
VCPKMT-202ENST00000395860 WDR62O43379 1518 aa33.64■■■□□ 2.98
VCPKMT-202ENST00000395860 EEA1Q15075 1411 aa33.61■■■□□ 2.97
VCPKMT-202ENST00000395860 RUSC2Q8N2Y8 1516 aa33.6■■■□□ 2.97
VCPKMT-202ENST00000395860 RAD54L2Q9Y4B4 1467 aa33.53■■■□□ 2.96
VCPKMT-202ENST00000395860 KIF27Q86VH2 1401 aa33.47■■■□□ 2.95
VCPKMT-202ENST00000395860 CUX2O14529 1486 aa33.47■■■□□ 2.95
VCPKMT-202ENST00000395860 ABCA10Q8WWZ4 1543 aa33.46■■■□□ 2.95
VCPKMT-202ENST00000395860 WDR97A6NE52 1622 aa33.46■■■□□ 2.95
VCPKMT-202ENST00000395860 CSRNP3Q8WYN3 585 aa33.42■■■□□ 2.94
VCPKMT-202ENST00000395860 TARBP1Q13395 1621 aaKnown RBP33.4■■■□□ 2.94
VCPKMT-202ENST00000395860 LOC105371045A0A1W2PR82 267 aa33.36■■■□□ 2.93
VCPKMT-202ENST00000395860 IFT140Q96RY7 1462 aa33.31■■■□□ 2.92
VCPKMT-202ENST00000395860 ABCA5Q8WWZ7 1642 aa33.26■■■□□ 2.91
VCPKMT-202ENST00000395860 EHMT2Q96KQ7 1210 aa33.24■■■□□ 2.91
VCPKMT-202ENST00000395860 KIF21BO75037 1637 aa33.22■■■□□ 2.91
VCPKMT-202ENST00000395860 TDRD9Q8NDG6 1382 aaKnown RBP33.22■■■□□ 2.91
VCPKMT-202ENST00000395860 GAPVD1Q14C86 1478 aa33.18■■■□□ 2.9
VCPKMT-202ENST00000395860 IGF1RP08069 1367 aa33.16■■■□□ 2.9
VCPKMT-202ENST00000395860 GOLGA3Q08378 1498 aa33.13■■■□□ 2.89
VCPKMT-202ENST00000395860 PRXQ9BXM0 1461 aa33.11■■■□□ 2.89
VCPKMT-202ENST00000395860 ZNF608Q9ULD9 1512 aaPredicted RBP33.11■■■□□ 2.89
VCPKMT-202ENST00000395860 PBRM1Q86U86 1689 aa33.11■■■□□ 2.89
VCPKMT-202ENST00000395860 AQRO60306 1485 aaKnown RBP eCLIP33.09■■■□□ 2.891e-6■■■■□ 26.1
VCPKMT-202ENST00000395860 ERICH3Q5RHP9 1530 aa33.08■■■□□ 2.89
VCPKMT-202ENST00000395860 CUL7Q14999 1698 aa33.06■■■□□ 2.88
VCPKMT-202ENST00000395860 EIF4G3O43432 1585 aaKnown RBP33.06■■■□□ 2.88
VCPKMT-202ENST00000395860 RAPGEF2Q9Y4G8 1499 aa33.05■■■□□ 2.88
VCPKMT-202ENST00000395860 CARMIL1Q5VZK9 1371 aa33.02■■■□□ 2.88
VCPKMT-202ENST00000395860 UBTFP17480 764 aaKnown RBP32.98■■■□□ 2.87
VCPKMT-202ENST00000395860 GRIN2BQ13224 1484 aa32.98■■■□□ 2.87
VCPKMT-202ENST00000395860 TNIKQ9UKE5 1360 aa32.92■■■□□ 2.86
VCPKMT-202ENST00000395860 ADAMTS12P58397 1594 aa32.85■■■□□ 2.85
VCPKMT-202ENST00000395860 SNAPC4Q5SXM2 1469 aa32.81■■■□□ 2.84
VCPKMT-202ENST00000395860 FHAD1B1AJZ9 1412 aa32.8■■■□□ 2.84
VCPKMT-202ENST00000395860 MAGI1Q96QZ7 1491 aaPredicted RBP32.76■■■□□ 2.83
VCPKMT-202ENST00000395860 CEP162Q5TB80 1403 aa32.71■■■□□ 2.83
VCPKMT-202ENST00000395860 CTTNBP2Q8WZ74 1663 aa32.68■■■□□ 2.82
VCPKMT-202ENST00000395860 SYNJ2O15056 1496 aa32.62■■■□□ 2.81
VCPKMT-202ENST00000395860 GRIN2AQ12879 1464 aa32.58■■■□□ 2.81
VCPKMT-202ENST00000395860 CLIP1P30622 1438 aa32.56■■■□□ 2.8
VCPKMT-202ENST00000395860 CHMP7Q8WUX9 453 aaPredicted RBP32.55■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms