Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC016405.3-201ENST00000607710 860 ntBASIC19.25■□□□□ 0.67
VMP1Q96GC9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.24■□□□□ 0.67
VMP1Q96GC9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VMP1Q96GC9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.24■□□□□ 0.67
VMP1Q96GC9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.24■□□□□ 0.67
VMP1Q96GC9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.24■□□□□ 0.67
VMP1Q96GC9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VMP1Q96GC9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VMP1Q96GC9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VMP1Q96GC9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.23■□□□□ 0.67
VMP1Q96GC9 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VMP1Q96GC9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.23■□□□□ 0.67
VMP1Q96GC9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VMP1Q96GC9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.22■□□□□ 0.67
VMP1Q96GC9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 AC116050.2-201ENST00000612102 1779 ntBASIC19.22■□□□□ 0.67
VMP1Q96GC9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 MKRN4P-201ENST00000444706 1521 ntBASIC19.22■□□□□ 0.67
VMP1Q96GC9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.22■□□□□ 0.67
VMP1Q96GC9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 GUSBP6-202ENST00000438529 1198 ntBASIC19.22■□□□□ 0.67
VMP1Q96GC9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VMP1Q96GC9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.22■□□□□ 0.67
VMP1Q96GC9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
VMP1Q96GC9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VMP1Q96GC9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VMP1Q96GC9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VMP1Q96GC9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
VMP1Q96GC9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VMP1Q96GC9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VMP1Q96GC9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VMP1Q96GC9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.21■□□□□ 0.67
VMP1Q96GC9 AL355802.2-201ENST00000402069 882 ntBASIC19.21■□□□□ 0.67
VMP1Q96GC9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
VMP1Q96GC9 AC093787.1-201ENST00000450396 207 ntBASIC19.21■□□□□ 0.67
VMP1Q96GC9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.21■□□□□ 0.67
VMP1Q96GC9 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.21■□□□□ 0.67
VMP1Q96GC9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VMP1Q96GC9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VMP1Q96GC9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VMP1Q96GC9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
VMP1Q96GC9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.2■□□□□ 0.66
VMP1Q96GC9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VMP1Q96GC9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms