RNA–Protein interactions for RNA: ENST00000428154.5

PMPCB-202, Transcript of peptidase, mitochondrial processing beta subunit, humanhuman

TSL 1 (best) BASIC

Gene PMPCB, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCB-202ENST00000428154 NISCHQ9Y2I1 1504 aa42.97■■■■■ 4.47
PMPCB-202ENST00000428154 CCDC180Q9P1Z9 1646 aa37.04■■■■□ 3.52
PMPCB-202ENST00000428154 ZCCHC6Q5VYS8 1495 aaKnown RBP36.3■■■■□ 3.4
PMPCB-202ENST00000428154 SHROOM4Q9ULL8 1493 aa35.63■■■■□ 3.29
PMPCB-202ENST00000428154 DCAF1Q9Y4B6 1507 aa35.62■■■■□ 3.29
PMPCB-202ENST00000428154 DCAF8L2P0C7V8 631 aa35.05■■■■□ 3.2
PMPCB-202ENST00000428154 SUPT5HO00267 1087 aaKnown RBP34.85■■■■□ 3.17
PMPCB-202ENST00000428154 MYO15BQ96JP2 1530 aa34.83■■■■□ 3.17
PMPCB-202ENST00000428154 NACADO15069 1562 aa34.26■■■■□ 3.07
PMPCB-202ENST00000428154 ABCC9O60706 1549 aa34.18■■■■□ 3.06
PMPCB-202ENST00000428154 SCRIBQ14160 1630 aa34.08■■■■□ 3.05
PMPCB-202ENST00000428154 CHIC1Q5VXU3 224 aa33.97■■■■□ 3.03
PMPCB-202ENST00000428154 RSF1Q96T23 1441 aaPredicted RBP33.71■■■□□ 2.99
PMPCB-202ENST00000428154 RB1CC1Q8TDY2 1594 aa33.69■■■□□ 2.98
PMPCB-202ENST00000428154 CECR2Q9BXF3 1484 aa33.22■■■□□ 2.91
PMPCB-202ENST00000428154 MROH2BQ7Z745 1585 aa33.18■■■□□ 2.9
PMPCB-202ENST00000428154 BAZ1AQ9NRL2 1556 aaPredicted RBP33.13■■■□□ 2.89
PMPCB-202ENST00000428154 UNC13AQ9UPW8 1703 aa32.99■■■□□ 2.87
PMPCB-202ENST00000428154 WIZO95785 1651 aa32.96■■■□□ 2.87
PMPCB-202ENST00000428154 SMARCA4P51532 1647 aa32.8■■■□□ 2.84
PMPCB-202ENST00000428154 TRIM41Q8WV44 630 aa32.78■■■□□ 2.84
PMPCB-202ENST00000428154 TOP2AP11388 1531 aaKnown RBP32.71■■■□□ 2.83
PMPCB-202ENST00000428154 LOC105371045A0A1W2PR82 267 aa32.63■■■□□ 2.81
PMPCB-202ENST00000428154 BICRAQ9NZM4 1560 aa32.59■■■□□ 2.81
PMPCB-202ENST00000428154 EIF4G1Q04637 1599 aaKnown RBP32.56■■■□□ 2.8
PMPCB-202ENST00000428154 PEG3Q9GZU2 1588 aa32.42■■■□□ 2.78
PMPCB-202ENST00000428154 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
PMPCB-202ENST00000428154 CCDC88BA6NC98 1476 aa32.36■■■□□ 2.77
PMPCB-202ENST00000428154 PCGF6Q9BYE7 350 aa32.29■■■□□ 2.76
PMPCB-202ENST00000428154 HRCP23327 699 aa32.28■■■□□ 2.76
PMPCB-202ENST00000428154 PABPN1Q86U42 306 aaKnown RBP eCLIP32.2■■■□□ 2.74
PMPCB-202ENST00000428154 TRIM26Q12899 539 aaPredicted RBP32.14■■■□□ 2.74
PMPCB-202ENST00000428154 FAM9AQ8IZU1 332 aaPredicted RBP32.09■■■□□ 2.73
PMPCB-202ENST00000428154 ATAD2BQ9ULI0 1458 aa32■■■□□ 2.71
PMPCB-202ENST00000428154 ABCC8Q09428 1581 aa31.95■■■□□ 2.71
PMPCB-202ENST00000428154 EEA1Q15075 1411 aa31.94■■■□□ 2.7
PMPCB-202ENST00000428154 BAZ1BQ9UIG0 1483 aaKnown RBP31.89■■■□□ 2.7
PMPCB-202ENST00000428154 WRNQ14191 1432 aaPredicted RBP eCLIP31.72■■■□□ 2.67
PMPCB-202ENST00000428154 HMGXB3Q12766 1538 aa31.65■■■□□ 2.66
PMPCB-202ENST00000428154 NCAPD3P42695 1498 aa31.59■■■□□ 2.65
PMPCB-202ENST00000428154 SOGA1O94964 1423 aa31.59■■■□□ 2.65
PMPCB-202ENST00000428154 TNIKQ9UKE5 1360 aa31.58■■■□□ 2.65
PMPCB-202ENST00000428154 CSRNP3Q8WYN3 585 aa31.56■■■□□ 2.64
PMPCB-202ENST00000428154 ZEB1P37275 1124 aaPredicted RBP31.52■■■□□ 2.64
PMPCB-202ENST00000428154 EHMT2Q96KQ7 1210 aa31.5■■■□□ 2.63
PMPCB-202ENST00000428154 SYNJ1O43426 1573 aa31.49■■■□□ 2.63
PMPCB-202ENST00000428154 GOLGA3Q08378 1498 aa31.45■■■□□ 2.63
PMPCB-202ENST00000428154 CEP162Q5TB80 1403 aa31.41■■■□□ 2.62
PMPCB-202ENST00000428154 KIF21BO75037 1637 aa31.39■■■□□ 2.61
PMPCB-202ENST00000428154 RUSC2Q8N2Y8 1516 aa31.37■■■□□ 2.61
PMPCB-202ENST00000428154 CEP164Q9UPV0 1460 aa31.36■■■□□ 2.61
PMPCB-202ENST00000428154 TOP2BQ02880 1626 aa31.36■■■□□ 2.61
PMPCB-202ENST00000428154 BIVM-ERCC5R4GMW8 1640 aa31.32■■■□□ 2.6
PMPCB-202ENST00000428154 UBTFP17480 764 aaKnown RBP31.21■■■□□ 2.59
PMPCB-202ENST00000428154 PPARGC1BQ86YN6 1023 aaKnown RBP31.18■■■□□ 2.58
PMPCB-202ENST00000428154 CFTRP13569 1480 aa31.17■■■□□ 2.58
PMPCB-202ENST00000428154 PRDM2Q13029 1718 aa31.11■■■□□ 2.57
PMPCB-202ENST00000428154 ERICH3Q5RHP9 1530 aa31■■■□□ 2.55
PMPCB-202ENST00000428154 CUX1P39880 1505 aa30.97■■■□□ 2.55
PMPCB-202ENST00000428154 CLIP1P30622 1438 aa30.95■■■□□ 2.55
PMPCB-202ENST00000428154 RAPGEF2Q9Y4G8 1499 aa30.92■■■□□ 2.54
PMPCB-202ENST00000428154 PRXQ9BXM0 1461 aa30.89■■■□□ 2.54
PMPCB-202ENST00000428154 KIF27Q86VH2 1401 aa30.86■■■□□ 2.53
PMPCB-202ENST00000428154 VPS8Q8N3P4 1428 aa30.86■■■□□ 2.53
PMPCB-202ENST00000428154 CADPSQ9ULU8 1353 aa30.84■■■□□ 2.53
PMPCB-202ENST00000428154 CC2D2AQ9P2K1 1620 aa30.8■■■□□ 2.52
PMPCB-202ENST00000428154 CCER1Q8TC90 406 aaPredicted RBP30.64■■■□□ 2.5
PMPCB-202ENST00000428154 APLP2Q06481 763 aa30.63■■■□□ 2.49
PMPCB-202ENST00000428154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.56■■■□□ 2.48
PMPCB-202ENST00000428154 CUX2O14529 1486 aa30.48■■■□□ 2.47
PMPCB-202ENST00000428154 ARAP1Q96P48 1450 aa30.48■■■□□ 2.47
PMPCB-202ENST00000428154 FGD5Q6ZNL6 1462 aa30.48■■■□□ 2.47
PMPCB-202ENST00000428154 FANCD2Q9BXW9 1451 aa30.48■■■□□ 2.47
PMPCB-202ENST00000428154 TTBK1Q5TCY1 1321 aaPredicted RBP30.46■■■□□ 2.47
PMPCB-202ENST00000428154 IGF1RP08069 1367 aa30.44■■■□□ 2.46
PMPCB-202ENST00000428154 DNMBPQ6XZF7 1577 aa30.43■■■□□ 2.46
PMPCB-202ENST00000428154 LAMC3Q9Y6N6 1575 aa30.36■■■□□ 2.45
PMPCB-202ENST00000428154 CARMIL1Q5VZK9 1371 aa30.32■■■□□ 2.44
PMPCB-202ENST00000428154 ARHGAP35Q9NRY4 1499 aa30.3■■■□□ 2.44
PMPCB-202ENST00000428154 ABCA10Q8WWZ4 1543 aa30.29■■■□□ 2.44
PMPCB-202ENST00000428154 TOPBP1Q92547 1522 aa30.27■■■□□ 2.44
PMPCB-202ENST00000428154 RANGAP1P46060 587 aaPredicted RBP30.25■■■□□ 2.43
PMPCB-202ENST00000428154 MAP3K1Q13233 1512 aa30.22■■■□□ 2.43
PMPCB-202ENST00000428154 POLA1P09884 1462 aaPredicted RBP30.19■■■□□ 2.42
PMPCB-202ENST00000428154 CUL7Q14999 1698 aa30.18■■■□□ 2.42
PMPCB-202ENST00000428154 RRBP1Q9P2E9 1410 aaKnown RBP30.13■■■□□ 2.41
PMPCB-202ENST00000428154 HNRNPUL2Q1KMD3 747 aaKnown RBP30.12■■■□□ 2.41
PMPCB-202ENST00000428154 NESP48681 1621 aa30.12■■■□□ 2.41
PMPCB-202ENST00000428154 PDS5BQ9NTI5 1447 aa30.1■■■□□ 2.41
PMPCB-202ENST00000428154 FHAD1B1AJZ9 1412 aa30.08■■■□□ 2.41
PMPCB-202ENST00000428154 CLSPNQ9HAW4 1339 aa30.06■■■□□ 2.4
PMPCB-202ENST00000428154 WDR97A6NE52 1622 aa30.06■■■□□ 2.4
PMPCB-202ENST00000428154 RAD54L2Q9Y4B4 1467 aa30.05■■■□□ 2.4
PMPCB-202ENST00000428154 EFCAB5A4FU69 1503 aa30.03■■■□□ 2.4
PMPCB-202ENST00000428154 KANK4Q5T7N3 995 aaPredicted RBP30.02■■■□□ 2.4
PMPCB-202ENST00000428154 TIAM1Q13009 1591 aa30.01■■■□□ 2.39
PMPCB-202ENST00000428154 URB2Q14146 1524 aaKnown RBP30■■■□□ 2.39
PMPCB-202ENST00000428154 CTTNBP2Q8WZ74 1663 aa29.96■■■□□ 2.39
PMPCB-202ENST00000428154 CCNB3Q8WWL7 1395 aa29.93■■■□□ 2.38
PMPCB-202ENST00000428154 ABCA5Q8WWZ7 1642 aa29.92■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms