Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.07■□□□□ 0.8
USH1CQ9Y6N9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.07■□□□□ 0.8
USH1CQ9Y6N9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.07■□□□□ 0.8
USH1CQ9Y6N9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.07■□□□□ 0.8
USH1CQ9Y6N9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USH1CQ9Y6N9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC20.05■□□□□ 0.8
USH1CQ9Y6N9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 HCG11-201ENST00000411553 5696 ntBASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USH1CQ9Y6N9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USH1CQ9Y6N9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USH1CQ9Y6N9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms