Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 CARS-201ENST00000278224 2491 ntTSL 1 (best) BASIC15.57■□□□□ 0.084e-12■■□□□ 12.7
U2AF1Q01081 AARS-201ENST00000261772 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.012e-7■■□□□ 12.7
U2AF1Q01081 CARS-212ENST00000526890 5732 ntTSL 214.22□□□□□ -0.134e-12■■□□□ 12.7
U2AF1Q01081 CARS-215ENST00000531387 2805 ntTSL 213.84□□□□□ -0.194e-12■■□□□ 12.7
U2AF1Q01081 CARS-205ENST00000465207 422 ntTSL 512.77□□□□□ -0.374e-12■■□□□ 12.7
U2AF1Q01081 EHBP1-210ENST00000444311 460 ntTSL 55.47□□□□□ -1.532e-6■■□□□ 12.7
U2AF1Q01081 EHBP1-215ENST00000469591 886 ntTSL 54.96□□□□□ -1.622e-6■■□□□ 12.7
U2AF1Q01081 SNHG1-216ENST00000541416 996 ntTSL 216.33■□□□□ 0.22e-12■■□□□ 12.7
U2AF1Q01081 SNHG1-221ENST00000544983 870 ntTSL 215.67■□□□□ 0.12e-12■■□□□ 12.7
U2AF1Q01081 SNHG1-207ENST00000537965 578 ntTSL 57.03□□□□□ -1.287e-8■■□□□ 12.7
U2AF1Q01081 SNHG1-222ENST00000545308 646 ntTSL 25.27□□□□□ -1.577e-8■■□□□ 12.7
U2AF1Q01081 SRRM2-222ENST00000575009 1146 ntTSL 535.06■■■■□ 3.28e-8■■□□□ 12.7
U2AF1Q01081 SRRM2-229ENST00000576894 2210 ntTSL 1 (best)26.73■■□□□ 1.878e-8■■□□□ 12.7
U2AF1Q01081 SRRM2-230ENST00000576924 3314 ntTSL 1 (best)21.82■■□□□ 1.088e-8■■□□□ 12.7
U2AF1Q01081 SRRM2-208ENST00000571378 2870 ntTSL 1 (best)18.99■□□□□ 0.638e-8■■□□□ 12.7
U2AF1Q01081 SMCHD1-213ENST00000609587 460 nt5.6□□□□□ -1.514e-6■■□□□ 12.7
U2AF1Q01081 AKR1C1-203ENST00000442997 744 ntTSL 313.94□□□□□ -0.182e-7■■□□□ 12.7
U2AF1Q01081 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.792e-7■■□□□ 12.7
U2AF1Q01081 AKR1C1-205ENST00000477661 2637 ntTSL 59.63□□□□□ -0.872e-7■■□□□ 12.7
U2AF1Q01081 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC38.8■■■■□ 3.85e-14■■□□□ 12.7
U2AF1Q01081 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC38.45■■■■□ 3.755e-14■■□□□ 12.7
U2AF1Q01081 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC37.86■■■■□ 3.655e-14■■□□□ 12.7
U2AF1Q01081 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC37.86■■■■□ 3.655e-14■■□□□ 12.7
U2AF1Q01081 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.54■■■■□ 3.125e-14■■□□□ 12.7
U2AF1Q01081 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.552e-8■■□□□ 12.7
U2AF1Q01081 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC29.79■■■□□ 2.365e-14■■□□□ 12.7
U2AF1Q01081 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC27■■□□□ 1.915e-14■■□□□ 12.7
U2AF1Q01081 MAN2A2-229ENST00000561240 460 ntTSL 423.24■■□□□ 1.312e-8■■□□□ 12.7
U2AF1Q01081 MAN2A2-224ENST00000560616 988 ntTSL 521.95■■□□□ 1.12e-8■■□□□ 12.7
U2AF1Q01081 HNRNPDL-205ENST00000514511 1143 ntTSL 221.76■■□□□ 1.071e-27■■□□□ 12.7
U2AF1Q01081 CDK9-203ENST00000480353 706 ntTSL 220.5■□□□□ 0.872e-8■■□□□ 12.7
U2AF1Q01081 MAN2A2-205ENST00000558171 790 ntTSL 520.42■□□□□ 0.862e-8■■□□□ 12.7
U2AF1Q01081 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC20.41■□□□□ 0.862e-8■■□□□ 12.7
U2AF1Q01081 CDK9-204ENST00000491521 510 ntTSL 318.1■□□□□ 0.492e-8■■□□□ 12.7
U2AF1Q01081 MAN2A2-222ENST00000560505 643 ntTSL 217.36■□□□□ 0.372e-8■■□□□ 12.7
U2AF1Q01081 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.342e-8■■□□□ 12.7
U2AF1Q01081 MAN2A2-220ENST00000560192 2469 ntTSL 1 (best)16.68■□□□□ 0.262e-8■■□□□ 12.7
U2AF1Q01081 UBR5-205ENST00000519365 602 ntTSL 37.53□□□□□ -1.22e-8■■□□□ 12.7
U2AF1Q01081 UBR5-208ENST00000520898 582 ntTSL 36.79□□□□□ -1.322e-8■■□□□ 12.7
U2AF1Q01081 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.212e-6■■□□□ 12.7
U2AF1Q01081 SYNJ2-201ENST00000355585 7378 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.192e-6■■□□□ 12.7
U2AF1Q01081 SYNJ2-207ENST00000638626 7332 ntTSL 1 (best) BASIC13.03□□□□□ -0.322e-6■■□□□ 12.7
U2AF1Q01081 ANKZF1-218ENST00000477479 2940 ntTSL 1 (best)18.11■□□□□ 0.492e-6■■□□□ 12.7
U2AF1Q01081 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.442e-6■■□□□ 12.7
U2AF1Q01081 ANKZF1-211ENST00000463792 3245 ntTSL 217.67■□□□□ 0.422e-6■■□□□ 12.7
U2AF1Q01081 ANKZF1-203ENST00000410034 2486 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.162e-6■■□□□ 12.7
U2AF1Q01081 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC14.53□□□□□ -0.082e-6■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.542e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-212ENST00000480112 5826 ntTSL 1 (best)15.94■□□□□ 0.142e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-217ENST00000484546 1269 ntTSL 1 (best)15.67■□□□□ 0.12e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-201ENST00000349780 6228 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.132e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-219ENST00000495406 635 ntTSL 214.13□□□□□ -0.152e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-206ENST00000433194 815 ntTSL 314.11□□□□□ -0.152e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-213ENST00000480467 931 ntTSL 313.75□□□□□ -0.212e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-205ENST00000425647 2747 ntTSL 212.02□□□□□ -0.482e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-203ENST00000360822 5551 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.52e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-210ENST00000474262 549 ntTSL 211.69□□□□□ -0.542e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-204ENST00000416449 3902 ntTSL 511.14□□□□□ -0.632e-7■■□□□ 12.7
U2AF1Q01081 CDK5RAP2-209ENST00000473282 5956 ntTSL 1 (best)9.73□□□□□ -0.852e-7■■□□□ 12.7
U2AF1Q01081 UBR5-203ENST00000518145 598 ntTSL 48.99□□□□□ -0.972e-8■■□□□ 12.6
U2AF1Q01081 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC15.6■□□□□ 0.092e-9■■□□□ 12.6
U2AF1Q01081 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC15.33■□□□□ 0.042e-9■■□□□ 12.6
U2AF1Q01081 FN1-206ENST00000359671 8524 ntTSL 5 BASIC15.05■□□□□ -02e-9■■□□□ 12.6
U2AF1Q01081 FN1-212ENST00000446046 7952 ntTSL 1 (best) BASIC14.74□□□□□ -0.052e-9■■□□□ 12.6
U2AF1Q01081 FN1-204ENST00000356005 7846 ntTSL 1 (best) BASIC14.28□□□□□ -0.122e-9■■□□□ 12.6
U2AF1Q01081 FN1-211ENST00000443816 7762 ntTSL 1 (best) BASIC14.23□□□□□ -0.132e-9■■□□□ 12.6
U2AF1Q01081 FN1-207ENST00000421182 8103 ntTSL 1 (best) BASIC13.99□□□□□ -0.172e-9■■□□□ 12.6
U2AF1Q01081 FN1-205ENST00000357867 7898 ntTSL 1 (best) BASIC13.94□□□□□ -0.182e-9■■□□□ 12.6
U2AF1Q01081 FN1-203ENST00000354785 8905 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.182e-9■■□□□ 12.6
U2AF1Q01081 FN1-209ENST00000432072 7759 ntTSL 1 (best) BASIC12.67□□□□□ -0.382e-9■■□□□ 12.6
U2AF1Q01081 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.445e-13■■□□□ 12.6
U2AF1Q01081 SRSF3-203ENST00000477442 1095 ntTSL 517.56■□□□□ 0.45e-13■■□□□ 12.6
U2AF1Q01081 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.045e-13■■□□□ 12.6
U2AF1Q01081 EWSR1-216ENST00000479135 7285 ntTSL 1 (best)13.1□□□□□ -0.311e-11■■□□□ 12.6
U2AF1Q01081 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.184e-16■■□□□ 12.6
U2AF1Q01081 SF3B2-204ENST00000525207 493 ntTSL 212.64□□□□□ -0.392e-8■■□□□ 12.6
U2AF1Q01081 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC27.63■■■□□ 2.019e-11■■□□□ 12.6
U2AF1Q01081 NUF2-204ENST00000450453 861 ntTSL 322.04■■□□□ 1.129e-11■■□□□ 12.6
U2AF1Q01081 NUF2-203ENST00000442820 1133 ntTSL 521.31■■□□□ 19e-11■■□□□ 12.6
U2AF1Q01081 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.232e-11■■□□□ 12.6
U2AF1Q01081 NUF2-201ENST00000271452 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.29e-11■■□□□ 12.6
U2AF1Q01081 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.119e-11■■□□□ 12.6
U2AF1Q01081 NUF2-207ENST00000497990 885 ntTSL 57.71□□□□□ -1.189e-11■■□□□ 12.6
U2AF1Q01081 NUF2-206ENST00000490881 695 ntTSL 56.87□□□□□ -1.319e-11■■□□□ 12.6
U2AF1Q01081 PPP1R10-206ENST00000484449 605 ntTSL 55.56□□□□□ -1.522e-11■■□□□ 12.6
U2AF1Q01081 NUF2-212ENST00000534289 567 ntTSL 45.44□□□□□ -1.549e-11■■□□□ 12.6
U2AF1Q01081 PPP1R10-204ENST00000473954 470 ntTSL 34.84□□□□□ -1.632e-11■■□□□ 12.6
U2AF1Q01081 TFRC-210ENST00000465288 560 ntTSL 511.61□□□□□ -0.554e-18■■□□□ 12.6
U2AF1Q01081 TFRC-211ENST00000475593 875 ntTSL 37.79□□□□□ -1.164e-18■■□□□ 12.6
U2AF1Q01081 TFRC-212ENST00000477148 570 ntTSL 47.3□□□□□ -1.244e-18■■□□□ 12.6
U2AF1Q01081 FNBP4-215ENST00000542975 577 ntTSL 423.31■■□□□ 1.329e-8■■□□□ 12.5
U2AF1Q01081 FNBP4-214ENST00000540172 582 ntTSL 319.63■□□□□ 0.739e-8■■□□□ 12.5
U2AF1Q01081 STK36-207ENST00000440309 4721 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.142e-6■■□□□ 12.5
U2AF1Q01081 STK36-202ENST00000392105 4821 ntTSL 1 (best) BASIC12.85□□□□□ -0.352e-6■■□□□ 12.5
U2AF1Q01081 STK36-201ENST00000295709 4933 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.512e-6■■□□□ 12.5
U2AF1Q01081 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC22.82■■□□□ 1.241e-13■■□□□ 12.5
U2AF1Q01081 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.891e-13■■□□□ 12.5
U2AF1Q01081 HSP90B1-203ENST00000548462 3032 ntTSL 215.14■□□□□ 0.011e-13■■□□□ 12.5
U2AF1Q01081 HSP90B1-207ENST00000550595 694 ntTSL 26.48□□□□□ -1.371e-13■■□□□ 12.5
U2AF1Q01081 HNRNPA2B1-206ENST00000490912 5328 ntTSL 219.16■□□□□ 0.662e-11■■□□□ 12.5
Retrieved 100 of 10,096 protein–RNA pairs in 58.7 ms