RNA–Protein interactions for RNA: ENST00000443816.5

FN1-211, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 7,762 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-211ENST00000443816 DCAF8L2P0C7V8 631 aa19.72■□□□□ 0.75
FN1-211ENST00000443816 NISCHQ9Y2I1 1504 aa18.82■□□□□ 0.6
FN1-211ENST00000443816 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
FN1-211ENST00000443816 FAM9AQ8IZU1 332 aaPredicted RBP18.04■□□□□ 0.48
FN1-211ENST00000443816 SHROOM4Q9ULL8 1493 aa18.04■□□□□ 0.48
FN1-211ENST00000443816 APLP2Q06481 763 aa17.82■□□□□ 0.44
FN1-211ENST00000443816 EHMT2Q96KQ7 1210 aa17.7■□□□□ 0.42
FN1-211ENST00000443816 PELP1Q8IZL8 1130 aaKnown RBP17.5■□□□□ 0.39
FN1-211ENST00000443816 ATP1B4Q9UN42 357 aaPredicted RBP17.23■□□□□ 0.35
FN1-211ENST00000443816 RANGAP1P46060 587 aaPredicted RBP17.13■□□□□ 0.33
FN1-211ENST00000443816 TRIM41Q8WV44 630 aa17.08■□□□□ 0.32
FN1-211ENST00000443816 TTBK1Q5TCY1 1321 aaPredicted RBP17.07■□□□□ 0.32
FN1-211ENST00000443816 UBTFP17480 764 aaKnown RBP17.01■□□□□ 0.31
FN1-211ENST00000443816 PCGF6Q9BYE7 350 aa16.85■□□□□ 0.29
FN1-211ENST00000443816 MYT1LQ9UL68 1186 aa16.82■□□□□ 0.28
FN1-211ENST00000443816 CCER1Q8TC90 406 aaPredicted RBP16.78■□□□□ 0.28
FN1-211ENST00000443816 ZEB1P37275 1124 aaPredicted RBP16.78■□□□□ 0.28
FN1-211ENST00000443816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.69■□□□□ 0.26
FN1-211ENST00000443816 HNRNPUL2Q1KMD3 747 aaKnown RBP16.69■□□□□ 0.26
FN1-211ENST00000443816 ERICH6Q7L0X2 663 aa16.63■□□□□ 0.25
FN1-211ENST00000443816 CENPBP07199 599 aaPredicted RBP16.63■□□□□ 0.25
FN1-211ENST00000443816 NEFLP07196 543 aa16.51■□□□□ 0.23
FN1-211ENST00000443816 ABCC9O60706 1549 aa16.49■□□□□ 0.23
FN1-211ENST00000443816 CHIC1Q5VXU3 224 aa16.36■□□□□ 0.21
FN1-211ENST00000443816 ITGAEP38570 1179 aa16.34■□□□□ 0.21
FN1-211ENST00000443816 POLR3GLQ9BT43 218 aa16.3■□□□□ 0.2
FN1-211ENST00000443816 SLC4A1APQ9BWU0 796 aaKnown RBP16.27■□□□□ 0.2
FN1-211ENST00000443816 PPARGC1BQ86YN6 1023 aaKnown RBP16.26■□□□□ 0.19
FN1-211ENST00000443816 PABPN1Q86U42 306 aaKnown RBP eCLIP16.26■□□□□ 0.19
FN1-211ENST00000443816 TRIM26Q12899 539 aaPredicted RBP16.21■□□□□ 0.18
FN1-211ENST00000443816 DAXXQ9UER7 740 aaPredicted RBP16.17■□□□□ 0.18
FN1-211ENST00000443816 YTHDC1Q96MU7 727 aaKnown RBP16.13■□□□□ 0.17
FN1-211ENST00000443816 FBLN2P98095 1184 aa16.11■□□□□ 0.17
FN1-211ENST00000443816 FAM50AQ14320 339 aaKnown RBP16.06■□□□□ 0.16
FN1-211ENST00000443816 CCDC180Q9P1Z9 1646 aa16.03■□□□□ 0.16
FN1-211ENST00000443816 TRIM52Q96A61 297 aa15.99■□□□□ 0.15
FN1-211ENST00000443816 CNGB1Q14028 1251 aaPredicted RBP15.97■□□□□ 0.15
FN1-211ENST00000443816 SCRIBQ14160 1630 aa15.94■□□□□ 0.14
FN1-211ENST00000443816 BCANQ96GW7 911 aa15.92■□□□□ 0.14
FN1-211ENST00000443816 LOC105371045A0A1W2PR82 267 aa15.91■□□□□ 0.14
FN1-211ENST00000443816 ESF1Q9H501 851 aaKnown RBP15.86■□□□□ 0.13
FN1-211ENST00000443816 CLSPNQ9HAW4 1339 aa15.82■□□□□ 0.12
FN1-211ENST00000443816 CDK11AQ9UQ88 783 aaPredicted RBP15.79■□□□□ 0.12
FN1-211ENST00000443816 ZBTB47Q9UFB7 747 aaPredicted RBP15.78■□□□□ 0.12
FN1-211ENST00000443816 NPM1P06748 294 aaKnown RBP eCLIP15.77■□□□□ 0.12
FN1-211ENST00000443816 NEFMP07197 916 aa15.77■□□□□ 0.12
FN1-211ENST00000443816 SLC24A1O60721 1099 aa15.76■□□□□ 0.11
FN1-211ENST00000443816 NEUROD1Q13562 356 aa15.74■□□□□ 0.11
FN1-211ENST00000443816 RB1CC1Q8TDY2 1594 aa15.73■□□□□ 0.11
FN1-211ENST00000443816 ZNF316A6NFI3 1004 aaPredicted RBP15.73■□□□□ 0.11
FN1-211ENST00000443816 HRCP23327 699 aa15.71■□□□□ 0.11
FN1-211ENST00000443816 ZNF326Q5BKZ1 582 aaKnown RBP15.71■□□□□ 0.11
FN1-211ENST00000443816 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
FN1-211ENST00000443816 ZNF777Q9ULD5 760 aaPredicted RBP15.62■□□□□ 0.09
FN1-211ENST00000443816 MYT1Q01538 1121 aa15.62■□□□□ 0.09
FN1-211ENST00000443816 P3H3Q8IVL6 736 aa15.62■□□□□ 0.09
FN1-211ENST00000443816 ANP32CO43423 234 aa15.6■□□□□ 0.09
FN1-211ENST00000443816 ARID3CA6NKF2 412 aa15.59■□□□□ 0.09
FN1-211ENST00000443816 CANXP27824 592 aaKnown RBP15.55■□□□□ 0.08
FN1-211ENST00000443816 DIEXFQ68CQ4 756 aaKnown RBP15.55■□□□□ 0.08
FN1-211ENST00000443816 PLPPR3Q6T4P5 718 aa15.53■□□□□ 0.08
FN1-211ENST00000443816 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
FN1-211ENST00000443816 RTL5Q5HYW3 569 aaPredicted RBP15.48■□□□□ 0.07
FN1-211ENST00000443816 CHGAP10645 457 aaKnown RBP15.47■□□□□ 0.07
FN1-211ENST00000443816 ZCCHC6Q5VYS8 1495 aaKnown RBP15.47■□□□□ 0.07
FN1-211ENST00000443816 NACADO15069 1562 aa15.46■□□□□ 0.07
FN1-211ENST00000443816 CHMP7Q8WUX9 453 aaPredicted RBP15.45■□□□□ 0.06
FN1-211ENST00000443816 BCL11AQ9H165 835 aa15.36■□□□□ 0.05
FN1-211ENST00000443816 ERCC6Q03468 1493 aa15.34■□□□□ 0.05
FN1-211ENST00000443816 TSPY4P0CV99 314 aa15.32■□□□□ 0.04
FN1-211ENST00000443816 TSPY10P0CW01 314 aa15.32■□□□□ 0.04
FN1-211ENST00000443816 TONSLQ96HA7 1378 aa15.32■□□□□ 0.04
FN1-211ENST00000443816 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.3■□□□□ 0.04
FN1-211ENST00000443816 SCAF1Q9H7N4 1312 aaKnown RBP15.28■□□□□ 0.04
FN1-211ENST00000443816 MTUS2Q5JR59 1369 aa15.25■□□□□ 0.03
FN1-211ENST00000443816 BAZ1BQ9UIG0 1483 aaKnown RBP15.25■□□□□ 0.03
FN1-211ENST00000443816 ACIN1Q9UKV3 1341 aaKnown RBP15.19■□□□□ 0.02
FN1-211ENST00000443816 ARID4BQ4LE39 1312 aaPredicted RBP15.19■□□□□ 0.02
FN1-211ENST00000443816 NPM2Q86SE8 214 aaKnown RBP15.18■□□□□ 0.02
FN1-211ENST00000443816 C14orf37Q86TY3 774 aa15.18■□□□□ 0.02
FN1-211ENST00000443816 PPP1R15AO75807 674 aaPredicted RBP15.18■□□□□ 0.02
FN1-211ENST00000443816 RSF1Q96T23 1441 aaPredicted RBP15.17■□□□□ 0.02
FN1-211ENST00000443816 A0A0G2JS52 829 aa15.14■□□□□ 0.01
FN1-211ENST00000443816 PLEKHD1A6NEE1 506 aa15.14■□□□□ 0.01
FN1-211ENST00000443816 KCNH8Q96L42 1107 aa15.13■□□□□ 0.01
FN1-211ENST00000443816 CHIC2Q9UKJ5 165 aa15.13■□□□□ 0.01
FN1-211ENST00000443816 UPF2Q9HAU5 1272 aaKnown RBP15.11■□□□□ 0.01
FN1-211ENST00000443816 HSP90AA1P07900 732 aaKnown RBP15.1■□□□□ 0.01
FN1-211ENST00000443816 HAP1P54257 671 aaPredicted RBP15.1■□□□□ 0.01
FN1-211ENST00000443816 WDR43Q15061 677 aaKnown RBP eCLIP15.1■□□□□ 0.01
FN1-211ENST00000443816 KDM2AQ9Y2K7 1162 aa15.08■□□□□ 0
FN1-211ENST00000443816 ANP32AP39687 249 aaKnown RBP15.08■□□□□ 0
FN1-211ENST00000443816 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.07■□□□□ 0
FN1-211ENST00000443816 TMC1Q8TDI8 760 aa15.07■□□□□ 0
FN1-211ENST00000443816 BAZ1AQ9NRL2 1556 aaPredicted RBP15.05■□□□□ -0
FN1-211ENST00000443816 EEA1Q15075 1411 aa15.04■□□□□ -0
FN1-211ENST00000443816 KIF27Q86VH2 1401 aa15.03■□□□□ -0
FN1-211ENST00000443816 ZBTB7CA1YPR0 619 aa15.03■□□□□ -0
FN1-211ENST00000443816 ANP32BQ92688 251 aaKnown RBP15.03■□□□□ -0
FN1-211ENST00000443816 CLIP1P30622 1438 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms