RNA–Protein interactions for RNA: ENST00000356005.8

FN1-204, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 7,846 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-204ENST00000356005 DCAF8L2P0C7V8 631 aa19.84■□□□□ 0.77
FN1-204ENST00000356005 NISCHQ9Y2I1 1504 aa19.15■□□□□ 0.66
FN1-204ENST00000356005 FAM9AQ8IZU1 332 aaPredicted RBP18.35■□□□□ 0.53
FN1-204ENST00000356005 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
FN1-204ENST00000356005 SHROOM4Q9ULL8 1493 aa18.03■□□□□ 0.48
FN1-204ENST00000356005 APLP2Q06481 763 aa17.93■□□□□ 0.46
FN1-204ENST00000356005 EHMT2Q96KQ7 1210 aa17.55■□□□□ 0.4
FN1-204ENST00000356005 PELP1Q8IZL8 1130 aaKnown RBP17.46■□□□□ 0.39
FN1-204ENST00000356005 ATP1B4Q9UN42 357 aaPredicted RBP17.27■□□□□ 0.36
FN1-204ENST00000356005 TRIM41Q8WV44 630 aa17.16■□□□□ 0.34
FN1-204ENST00000356005 RANGAP1P46060 587 aaPredicted RBP17.08■□□□□ 0.33
FN1-204ENST00000356005 UBTFP17480 764 aaKnown RBP17.08■□□□□ 0.32
FN1-204ENST00000356005 MYT1LQ9UL68 1186 aa16.94■□□□□ 0.3
FN1-204ENST00000356005 TTBK1Q5TCY1 1321 aaPredicted RBP16.93■□□□□ 0.3
FN1-204ENST00000356005 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.81■□□□□ 0.28
FN1-204ENST00000356005 HNRNPUL2Q1KMD3 747 aaKnown RBP16.81■□□□□ 0.28
FN1-204ENST00000356005 ZEB1P37275 1124 aaPredicted RBP16.78■□□□□ 0.28
FN1-204ENST00000356005 ABCC9O60706 1549 aa16.78■□□□□ 0.28
FN1-204ENST00000356005 PCGF6Q9BYE7 350 aa16.74■□□□□ 0.27
FN1-204ENST00000356005 CCER1Q8TC90 406 aaPredicted RBP16.73■□□□□ 0.27
FN1-204ENST00000356005 CENPBP07199 599 aaPredicted RBP16.54■□□□□ 0.24
FN1-204ENST00000356005 ERICH6Q7L0X2 663 aa16.48■□□□□ 0.23
FN1-204ENST00000356005 NEFLP07196 543 aa16.46■□□□□ 0.23
FN1-204ENST00000356005 CCDC180Q9P1Z9 1646 aa16.46■□□□□ 0.23
FN1-204ENST00000356005 PABPN1Q86U42 306 aaKnown RBP eCLIP16.45■□□□□ 0.22
FN1-204ENST00000356005 CHIC1Q5VXU3 224 aa16.37■□□□□ 0.21
FN1-204ENST00000356005 ITGAEP38570 1179 aa16.31■□□□□ 0.2
FN1-204ENST00000356005 SLC4A1APQ9BWU0 796 aaKnown RBP16.29■□□□□ 0.2
FN1-204ENST00000356005 FBLN2P98095 1184 aa16.28■□□□□ 0.2
FN1-204ENST00000356005 POLR3GLQ9BT43 218 aa16.25■□□□□ 0.19
FN1-204ENST00000356005 TRIM26Q12899 539 aaPredicted RBP16.18■□□□□ 0.18
FN1-204ENST00000356005 SCRIBQ14160 1630 aa16.14■□□□□ 0.17
FN1-204ENST00000356005 RB1CC1Q8TDY2 1594 aa16.12■□□□□ 0.17
FN1-204ENST00000356005 DAXXQ9UER7 740 aaPredicted RBP16.12■□□□□ 0.17
FN1-204ENST00000356005 PPARGC1BQ86YN6 1023 aaKnown RBP16.1■□□□□ 0.17
FN1-204ENST00000356005 FAM50AQ14320 339 aaKnown RBP16.1■□□□□ 0.17
FN1-204ENST00000356005 ESF1Q9H501 851 aaKnown RBP16.1■□□□□ 0.17
FN1-204ENST00000356005 NPM1P06748 294 aaKnown RBP eCLIP16.06■□□□□ 0.16
FN1-204ENST00000356005 BCANQ96GW7 911 aa16.04■□□□□ 0.16
FN1-204ENST00000356005 TRIM52Q96A61 297 aa16.03■□□□□ 0.16
FN1-204ENST00000356005 CDK11AQ9UQ88 783 aaPredicted RBP16.03■□□□□ 0.16
FN1-204ENST00000356005 NEFMP07197 916 aa15.91■□□□□ 0.14
FN1-204ENST00000356005 YTHDC1Q96MU7 727 aaKnown RBP15.9■□□□□ 0.14
FN1-204ENST00000356005 NACADO15069 1562 aa15.86■□□□□ 0.13
FN1-204ENST00000356005 ZBTB47Q9UFB7 747 aaPredicted RBP15.84■□□□□ 0.13
FN1-204ENST00000356005 CNGB1Q14028 1251 aaPredicted RBP15.83■□□□□ 0.12
FN1-204ENST00000356005 STAG3Q9UJ98 1225 aa15.82■□□□□ 0.12
FN1-204ENST00000356005 LOC105371045A0A1W2PR82 267 aa15.81■□□□□ 0.12
FN1-204ENST00000356005 CLSPNQ9HAW4 1339 aa15.78■□□□□ 0.12
FN1-204ENST00000356005 SLC24A1O60721 1099 aa15.77■□□□□ 0.12
FN1-204ENST00000356005 ZCCHC6Q5VYS8 1495 aaKnown RBP15.73■□□□□ 0.11
FN1-204ENST00000356005 ZNF326Q5BKZ1 582 aaKnown RBP15.71■□□□□ 0.11
FN1-204ENST00000356005 ZNF777Q9ULD5 760 aaPredicted RBP15.71■□□□□ 0.1
FN1-204ENST00000356005 NEUROD1Q13562 356 aa15.69■□□□□ 0.1
FN1-204ENST00000356005 CHMP7Q8WUX9 453 aaPredicted RBP15.69■□□□□ 0.1
FN1-204ENST00000356005 P3H3Q8IVL6 736 aa15.66■□□□□ 0.1
FN1-204ENST00000356005 ERCC6Q03468 1493 aa15.66■□□□□ 0.1
FN1-204ENST00000356005 ZNF316A6NFI3 1004 aaPredicted RBP15.65■□□□□ 0.1
FN1-204ENST00000356005 CSRNP3Q8WYN3 585 aa15.63■□□□□ 0.09
FN1-204ENST00000356005 ARID3CA6NKF2 412 aa15.61■□□□□ 0.09
FN1-204ENST00000356005 ANP32CO43423 234 aa15.59■□□□□ 0.09
FN1-204ENST00000356005 PLPPR3Q6T4P5 718 aa15.59■□□□□ 0.09
FN1-204ENST00000356005 HRCP23327 699 aa15.57■□□□□ 0.08
FN1-204ENST00000356005 CHGAP10645 457 aaKnown RBP15.56■□□□□ 0.08
FN1-204ENST00000356005 CANXP27824 592 aaKnown RBP15.55■□□□□ 0.08
FN1-204ENST00000356005 BAZ1BQ9UIG0 1483 aaKnown RBP15.52■□□□□ 0.08
FN1-204ENST00000356005 TSPY4P0CV99 314 aa15.5■□□□□ 0.07
FN1-204ENST00000356005 TSPY10P0CW01 314 aa15.5■□□□□ 0.07
FN1-204ENST00000356005 ACIN1Q9UKV3 1341 aaKnown RBP15.5■□□□□ 0.07
FN1-204ENST00000356005 DIEXFQ68CQ4 756 aaKnown RBP15.44■□□□□ 0.06
FN1-204ENST00000356005 MYT1Q01538 1121 aa15.44■□□□□ 0.06
FN1-204ENST00000356005 MTUS2Q5JR59 1369 aa15.4■□□□□ 0.06
FN1-204ENST00000356005 TONSLQ96HA7 1378 aa15.38■□□□□ 0.05
FN1-204ENST00000356005 RSF1Q96T23 1441 aaPredicted RBP15.38■□□□□ 0.05
FN1-204ENST00000356005 ARID4BQ4LE39 1312 aaPredicted RBP15.37■□□□□ 0.05
FN1-204ENST00000356005 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.37■□□□□ 0.05
FN1-204ENST00000356005 RTL5Q5HYW3 569 aaPredicted RBP15.37■□□□□ 0.05
FN1-204ENST00000356005 SCAF1Q9H7N4 1312 aaKnown RBP15.37■□□□□ 0.05
FN1-204ENST00000356005 NPM2Q86SE8 214 aaKnown RBP15.36■□□□□ 0.05
FN1-204ENST00000356005 BAZ1AQ9NRL2 1556 aaPredicted RBP15.35■□□□□ 0.05
FN1-204ENST00000356005 PLEKHD1A6NEE1 506 aa15.34■□□□□ 0.05
FN1-204ENST00000356005 PPP1R15AO75807 674 aaPredicted RBP15.34■□□□□ 0.05
FN1-204ENST00000356005 C14orf37Q86TY3 774 aa15.34■□□□□ 0.05
FN1-204ENST00000356005 EEA1Q15075 1411 aa15.28■□□□□ 0.04
FN1-204ENST00000356005 KCNH8Q96L42 1107 aa15.27■□□□□ 0.03
FN1-204ENST00000356005 KIF27Q86VH2 1401 aa15.26■□□□□ 0.03
FN1-204ENST00000356005 HAP1P54257 671 aaPredicted RBP15.26■□□□□ 0.03
FN1-204ENST00000356005 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
FN1-204ENST00000356005 BCL11AQ9H165 835 aa15.23■□□□□ 0.03
FN1-204ENST00000356005 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
FN1-204ENST00000356005 A0A0G2JS52 829 aa15.21■□□□□ 0.03
FN1-204ENST00000356005 DCAF1Q9Y4B6 1507 aa15.19■□□□□ 0.02
FN1-204ENST00000356005 HDGFP51858 240 aaKnown RBP15.16■□□□□ 0.02
FN1-204ENST00000356005 CHIC2Q9UKJ5 165 aa15.16■□□□□ 0.02
FN1-204ENST00000356005 GOLGA3Q08378 1498 aa15.16■□□□□ 0.02
FN1-204ENST00000356005 PDS5BQ9NTI5 1447 aa15.15■□□□□ 0.02
FN1-204ENST00000356005 CLIP1P30622 1438 aa15.15■□□□□ 0.02
FN1-204ENST00000356005 WDR43Q15061 677 aaKnown RBP eCLIP15.15■□□□□ 0.02
FN1-204ENST00000356005 WRNQ14191 1432 aaPredicted RBP eCLIP15.14■□□□□ 0.01
FN1-204ENST00000356005 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms