RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 AEBP2Q6ZN18 517 aaPredicted RBP28.96■■■□□ 2.23
SMCHD1-213ENST00000609587 CHIC1Q5VXU3 224 aa27.09■■□□□ 1.93
SMCHD1-213ENST00000609587 SENP3Q9H4L4 574 aaPredicted RBP24.67■■□□□ 1.54
SMCHD1-213ENST00000609587 PHF23Q9BUL5 403 aaPredicted RBP24.29■■□□□ 1.48
SMCHD1-213ENST00000609587 FOXD1Q16676 465 aa23.08■■□□□ 1.29
SMCHD1-213ENST00000609587 POTEDQ86YR6 584 aa21.82■■□□□ 1.08
SMCHD1-213ENST00000609587 MSH5O43196 834 aa21.68■■□□□ 1.06
SMCHD1-213ENST00000609587 PIAS4Q8N2W9 510 aaPredicted RBP21.46■■□□□ 1.03
SMCHD1-213ENST00000609587 PLPPR3Q6T4P5 718 aa21.44■■□□□ 1.02
SMCHD1-213ENST00000609587 PPP6R1Q9UPN7 881 aa21.32■■□□□ 1
SMCHD1-213ENST00000609587 ADRA2BP18089 450 aa21.21■□□□□ 0.99
SMCHD1-213ENST00000609587 MAPK8IP2Q13387 824 aaPredicted RBP19.59■□□□□ 0.73
SMCHD1-213ENST00000609587 DMRT2Q9Y5R5 561 aa19.54■□□□□ 0.72
SMCHD1-213ENST00000609587 SCAF1Q9H7N4 1312 aaKnown RBP19.29■□□□□ 0.68
SMCHD1-213ENST00000609587 CACNB1Q02641 598 aaPredicted RBP18.81■□□□□ 0.6
SMCHD1-213ENST00000609587 PPP4R3CPQ6ZMV5 832 aa18.77■□□□□ 0.6
SMCHD1-213ENST00000609587 DCAF8L1A6NGE4 600 aa18.7■□□□□ 0.58
SMCHD1-213ENST00000609587 HOXD11P31277 338 aaPredicted RBP18.67■□□□□ 0.58
SMCHD1-213ENST00000609587 RNF39Q9H2S5 420 aa18.51■□□□□ 0.55
SMCHD1-213ENST00000609587 CNKSR2Q8WXI2 1034 aa18.47■□□□□ 0.55
SMCHD1-213ENST00000609587 RNF216Q9NWF9 866 aaPredicted RBP18.41■□□□□ 0.54
SMCHD1-213ENST00000609587 C1QBPQ07021 282 aaKnown RBP18.17■□□□□ 0.5
SMCHD1-213ENST00000609587 DNAJC5BQ9UF47 199 aa18.06■□□□□ 0.48
SMCHD1-213ENST00000609587 NCBP3Q53F19 620 aaKnown RBP17.87■□□□□ 0.45
SMCHD1-213ENST00000609587 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.74■□□□□ 0.43
SMCHD1-213ENST00000609587 NPM3O75607 178 aaKnown RBP17.71■□□□□ 0.43
SMCHD1-213ENST00000609587 U3KPZ7 1027 aaPredicted RBP17.41■□□□□ 0.38
SMCHD1-213ENST00000609587 SPINK5Q9NQ38 1064 aaPredicted RBP17.26■□□□□ 0.35
SMCHD1-213ENST00000609587 DSG3P32926 999 aa17.21■□□□□ 0.35
SMCHD1-213ENST00000609587 CAPN15O75808 1086 aa17.18■□□□□ 0.34
SMCHD1-213ENST00000609587 KCNA4P22459 653 aa17.08■□□□□ 0.32
SMCHD1-213ENST00000609587 SLC4A2P04920 1241 aa17.03■□□□□ 0.32
SMCHD1-213ENST00000609587 POTEHQ6S545 545 aa17■□□□□ 0.31
SMCHD1-213ENST00000609587 TRHP20396 242 aaPredicted RBP16.83■□□□□ 0.28
SMCHD1-213ENST00000609587 ABCB7O75027 752 aa16.8■□□□□ 0.28
SMCHD1-213ENST00000609587 ZNF219Q9P2Y4 722 aaPredicted RBP16.78■□□□□ 0.28
SMCHD1-213ENST00000609587 APLP2Q06481 763 aa16.75■□□□□ 0.27
SMCHD1-213ENST00000609587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.68■□□□□ 0.26
SMCHD1-213ENST00000609587 HNRNPUL2Q1KMD3 747 aaKnown RBP16.68■□□□□ 0.26
SMCHD1-213ENST00000609587 SAMD1Q6SPF0 538 aaPredicted RBP16.6■□□□□ 0.25
SMCHD1-213ENST00000609587 RBM42Q9BTD8 480 aaKnown RBP16.38■□□□□ 0.21
SMCHD1-213ENST00000609587 MYCNP04198 464 aaPredicted RBP16.36■□□□□ 0.21
SMCHD1-213ENST00000609587 POLA2Q14181 598 aa16.29■□□□□ 0.2
SMCHD1-213ENST00000609587 CHRDL2Q6WN34 429 aa16.2■□□□□ 0.18
SMCHD1-213ENST00000609587 ATF5Q9Y2D1 282 aaPredicted RBP16.07■□□□□ 0.16
SMCHD1-213ENST00000609587 FOXD4L1Q9NU39 408 aa16.01■□□□□ 0.15
SMCHD1-213ENST00000609587 SLC4A1APQ9BWU0 796 aaKnown RBP16■□□□□ 0.15
SMCHD1-213ENST00000609587 AKT1S1Q96B36 256 aa15.93■□□□□ 0.14
SMCHD1-213ENST00000609587 ZBTB12Q9Y330 459 aaPredicted RBP15.91■□□□□ 0.14
SMCHD1-213ENST00000609587 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
SMCHD1-213ENST00000609587 REM2Q8IYK8 340 aaPredicted RBP15.81■□□□□ 0.12
SMCHD1-213ENST00000609587 SP7Q8TDD2 431 aaPredicted RBP15.78■□□□□ 0.12
SMCHD1-213ENST00000609587 PIP4P2Q8N4L2 257 aa15.76■□□□□ 0.11
SMCHD1-213ENST00000609587 ZBTB22O15209 634 aa15.75■□□□□ 0.11
SMCHD1-213ENST00000609587 PITPNM1O00562 1244 aa15.69■□□□□ 0.1
SMCHD1-213ENST00000609587 FXR2P51116 673 aaKnown RBP eCLIP15.59■□□□□ 0.09
SMCHD1-213ENST00000609587 ATXN8OSP0DMR3 200 aa15.51■□□□□ 0.07
SMCHD1-213ENST00000609587 HAX1O00165 279 aa15.5■□□□□ 0.07
SMCHD1-213ENST00000609587 SPDYE2BA6NHP3 402 aa15.41■□□□□ 0.06
SMCHD1-213ENST00000609587 SPDYE6P0CI01 402 aa15.41■□□□□ 0.06
SMCHD1-213ENST00000609587 SPDYE2Q495Y8 402 aa15.41■□□□□ 0.06
SMCHD1-213ENST00000609587 EVX2Q03828 476 aa15.37■□□□□ 0.05
SMCHD1-213ENST00000609587 FBLN2P98095 1184 aa15.36■□□□□ 0.05
SMCHD1-213ENST00000609587 MKRN4PQ13434 485 aaPredicted RBP15.32■□□□□ 0.04
SMCHD1-213ENST00000609587 PRKAR2AP13861 404 aaKnown RBP15.24■□□□□ 0.03
SMCHD1-213ENST00000609587 SPDYE1Q8NFV5 336 aaPredicted RBP15.22■□□□□ 0.03
SMCHD1-213ENST00000609587 SSUH2Q9Y2M2 353 aa15.22■□□□□ 0.03
SMCHD1-213ENST00000609587 CLEC11AQ9Y240 323 aa15.21■□□□□ 0.03
SMCHD1-213ENST00000609587 ZNF692Q9BU19 519 aaPredicted RBP15.15■□□□□ 0.02
SMCHD1-213ENST00000609587 C19orf67A6NJJ6 358 aa15.11■□□□□ 0.01
SMCHD1-213ENST00000609587 CHADLQ6NUI6 762 aa15.01□□□□□ -0.01
SMCHD1-213ENST00000609587 GABBR2O75899 941 aa14.96□□□□□ -0.01
SMCHD1-213ENST00000609587 PABPN1Q86U42 306 aaKnown RBP eCLIP14.95□□□□□ -0.02
SMCHD1-213ENST00000609587 PRR29P0C7W0 189 aa14.89□□□□□ -0.03
SMCHD1-213ENST00000609587 LHX8Q68G74 356 aa14.76□□□□□ -0.05
SMCHD1-213ENST00000609587 CD44P16070 742 aaKnown RBP14.74□□□□□ -0.05
SMCHD1-213ENST00000609587 FARP1Q9Y4F1 1045 aaPredicted RBP14.73□□□□□ -0.05
SMCHD1-213ENST00000609587 POTEIP0CG38 1075 aa14.69□□□□□ -0.06
SMCHD1-213ENST00000609587 CSRNP3Q8WYN3 585 aa14.63□□□□□ -0.07
SMCHD1-213ENST00000609587 ZNF579Q8NAF0 562 aaKnown RBP14.51□□□□□ -0.09
SMCHD1-213ENST00000609587 CREBZFQ9NS37 354 aa14.51□□□□□ -0.09
SMCHD1-213ENST00000609587 CLCN6P51797 869 aa14.5□□□□□ -0.09
SMCHD1-213ENST00000609587 ZRANB1Q9UGI0 708 aa14.45□□□□□ -0.1
SMCHD1-213ENST00000609587 DCBLD2Q96PD2 775 aa14.43□□□□□ -0.1
SMCHD1-213ENST00000609587 STAG3Q9UJ98 1225 aa14.39□□□□□ -0.11
SMCHD1-213ENST00000609587 GALR2O43603 387 aaPredicted RBP14.37□□□□□ -0.11
SMCHD1-213ENST00000609587 SPDYE4A6NLX3 237 aa14.34□□□□□ -0.11
SMCHD1-213ENST00000609587 PHF12Q96QT6 1004 aa14.29□□□□□ -0.12
SMCHD1-213ENST00000609587 EHMT2Q96KQ7 1210 aa14.26□□□□□ -0.13
SMCHD1-213ENST00000609587 MNX1P50219 401 aaPredicted RBP14.24□□□□□ -0.13
SMCHD1-213ENST00000609587 PAK3O75914 559 aaPredicted RBP14.21□□□□□ -0.13
SMCHD1-213ENST00000609587 POTEB2H3BUK9 544 aa14.2□□□□□ -0.14
SMCHD1-213ENST00000609587 OTUD5Q96G74 571 aa14.19□□□□□ -0.14
SMCHD1-213ENST00000609587 NPM1P06748 294 aaKnown RBP eCLIP14.14□□□□□ -0.15
SMCHD1-213ENST00000609587 PELP1Q8IZL8 1130 aaKnown RBP14.13□□□□□ -0.15
SMCHD1-213ENST00000609587 PLSCR2Q9NRY7 297 aa14.11□□□□□ -0.15
SMCHD1-213ENST00000609587 MS4A3Q96HJ5 214 aa14.08□□□□□ -0.16
SMCHD1-213ENST00000609587 ASTLQ6HA08 431 aaPredicted RBP14.03□□□□□ -0.16
SMCHD1-213ENST00000609587 PROM2Q8N271 834 aa14.01□□□□□ -0.17
SMCHD1-213ENST00000609587 METRNQ9UJH8 293 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms