Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC1P18887 AC116050.2-201ENST00000612102 1779 ntBASIC20.13■□□□□ 0.81
XRCC1P18887 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC1P18887 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
XRCC1P18887 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.12■□□□□ 0.81
XRCC1P18887 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.12■□□□□ 0.81
XRCC1P18887 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.12■□□□□ 0.81
XRCC1P18887 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.12■□□□□ 0.81
XRCC1P18887 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
XRCC1P18887 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.12■□□□□ 0.81
XRCC1P18887 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.12■□□□□ 0.81
XRCC1P18887 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC1P18887 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.11■□□□□ 0.81
XRCC1P18887 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.11■□□□□ 0.81
XRCC1P18887 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.11■□□□□ 0.81
XRCC1P18887 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.11■□□□□ 0.81
XRCC1P18887 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.11■□□□□ 0.81
XRCC1P18887 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.11■□□□□ 0.81
XRCC1P18887 KRT18P6-201ENST00000555540 1265 ntBASIC20.11■□□□□ 0.81
XRCC1P18887 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.11■□□□□ 0.81
XRCC1P18887 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.11■□□□□ 0.81
XRCC1P18887 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
XRCC1P18887 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
XRCC1P18887 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
XRCC1P18887 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC1P18887 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.1■□□□□ 0.81
XRCC1P18887 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
XRCC1P18887 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.1■□□□□ 0.81
XRCC1P18887 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
XRCC1P18887 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
XRCC1P18887 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.1■□□□□ 0.81
XRCC1P18887 AC098934.4-201ENST00000564127 592 ntBASIC20.1■□□□□ 0.81
XRCC1P18887 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
XRCC1P18887 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.1■□□□□ 0.81
XRCC1P18887 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
XRCC1P18887 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.1■□□□□ 0.81
XRCC1P18887 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC1P18887 AC006128.1-201ENST00000624704 1661 ntBASIC20.1■□□□□ 0.81
XRCC1P18887 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 MCRIP2P1-201ENST00000394346 511 ntBASIC20.09■□□□□ 0.81
XRCC1P18887 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.09■□□□□ 0.81
XRCC1P18887 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.09■□□□□ 0.81
XRCC1P18887 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.09■□□□□ 0.81
XRCC1P18887 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.09■□□□□ 0.81
XRCC1P18887 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC1P18887 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.08■□□□□ 0.81
XRCC1P18887 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.08■□□□□ 0.81
XRCC1P18887 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
XRCC1P18887 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.08■□□□□ 0.81
XRCC1P18887 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms