RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 NISCHQ9Y2I1 1504 aa42.07■■■■■ 4.33
SOX2-201ENST00000325404 CCDC180Q9P1Z9 1646 aa36.47■■■■□ 3.43
SOX2-201ENST00000325404 ZCCHC6Q5VYS8 1495 aaKnown RBP35.41■■■■□ 3.26
SOX2-201ENST00000325404 DCAF8L2P0C7V8 631 aa34.77■■■■□ 3.16
SOX2-201ENST00000325404 DCAF1Q9Y4B6 1507 aa34.75■■■■□ 3.15
SOX2-201ENST00000325404 SHROOM4Q9ULL8 1493 aa34.67■■■■□ 3.14
SOX2-201ENST00000325404 ABCC9O60706 1549 aa34.31■■■■□ 3.08
SOX2-201ENST00000325404 MYO15BQ96JP2 1530 aa34.21■■■■□ 3.07
SOX2-201ENST00000325404 SUPT5HO00267 1087 aaKnown RBP34.1■■■■□ 3.05
SOX2-201ENST00000325404 NACADO15069 1562 aa33.92■■■■□ 3.02
SOX2-201ENST00000325404 SCRIBQ14160 1630 aa33.67■■■□□ 2.98
SOX2-201ENST00000325404 RB1CC1Q8TDY2 1594 aa33.57■■■□□ 2.96
SOX2-201ENST00000325404 CHIC1Q5VXU3 224 aa33.45■■■□□ 2.95
SOX2-201ENST00000325404 UNC13AQ9UPW8 1703 aa32.85■■■□□ 2.85
SOX2-201ENST00000325404 RSF1Q96T23 1441 aaPredicted RBP32.8■■■□□ 2.84
SOX2-201ENST00000325404 CECR2Q9BXF3 1484 aa32.7■■■□□ 2.83
SOX2-201ENST00000325404 HRCP23327 699 aa32.59■■■□□ 2.81
SOX2-201ENST00000325404 BICRAQ9NZM4 1560 aa32.54■■■□□ 2.8
SOX2-201ENST00000325404 MROH2BQ7Z745 1585 aa32.54■■■□□ 2.8
SOX2-201ENST00000325404 BAZ1AQ9NRL2 1556 aaPredicted RBP32.46■■■□□ 2.79
SOX2-201ENST00000325404 PABPN1Q86U42 306 aaKnown RBP eCLIP32.45■■■□□ 2.79
SOX2-201ENST00000325404 PCGF6Q9BYE7 350 aa32.3■■■□□ 2.76
SOX2-201ENST00000325404 WIZO95785 1651 aa32.28■■■□□ 2.76
SOX2-201ENST00000325404 SMARCA4P51532 1647 aa32.26■■■□□ 2.76
SOX2-201ENST00000325404 LOC105371045A0A1W2PR82 267 aa32.23■■■□□ 2.75
SOX2-201ENST00000325404 TRIM41Q8WV44 630 aa31.95■■■□□ 2.71
SOX2-201ENST00000325404 TOP2AP11388 1531 aaKnown RBP31.95■■■□□ 2.7
SOX2-201ENST00000325404 TRIM26Q12899 539 aaPredicted RBP31.94■■■□□ 2.7
SOX2-201ENST00000325404 PEG3Q9GZU2 1588 aa31.83■■■□□ 2.69
SOX2-201ENST00000325404 ATAD2BQ9ULI0 1458 aa31.68■■■□□ 2.66
SOX2-201ENST00000325404 SMARCA2P51531 1590 aa31.66■■■□□ 2.66
SOX2-201ENST00000325404 CCDC88BA6NC98 1476 aa31.65■■■□□ 2.66
SOX2-201ENST00000325404 EIF4G1Q04637 1599 aaKnown RBP31.56■■■□□ 2.64
SOX2-201ENST00000325404 PPARGC1BQ86YN6 1023 aaKnown RBP31.55■■■□□ 2.64
SOX2-201ENST00000325404 BAZ1BQ9UIG0 1483 aaKnown RBP31.53■■■□□ 2.64
SOX2-201ENST00000325404 ZEB1P37275 1124 aaPredicted RBP31.44■■■□□ 2.62
SOX2-201ENST00000325404 FAM9AQ8IZU1 332 aaPredicted RBP31.41■■■□□ 2.62
SOX2-201ENST00000325404 NCAPD3P42695 1498 aa31.33■■■□□ 2.61
SOX2-201ENST00000325404 HMGXB3Q12766 1538 aa31.3■■■□□ 2.6
SOX2-201ENST00000325404 ABCC8Q09428 1581 aa31.1■■■□□ 2.57
SOX2-201ENST00000325404 CC2D2AQ9P2K1 1620 aa31■■■□□ 2.55
SOX2-201ENST00000325404 EEA1Q15075 1411 aa30.92■■■□□ 2.54
SOX2-201ENST00000325404 EHMT2Q96KQ7 1210 aa30.9■■■□□ 2.54
SOX2-201ENST00000325404 WRNQ14191 1432 aaPredicted RBP eCLIP30.89■■■□□ 2.54
SOX2-201ENST00000325404 TNIKQ9UKE5 1360 aa30.78■■■□□ 2.52
SOX2-201ENST00000325404 CFTRP13569 1480 aa30.74■■■□□ 2.51
SOX2-201ENST00000325404 SYNJ1O43426 1573 aa30.71■■■□□ 2.51
SOX2-201ENST00000325404 SOGA1O94964 1423 aa30.7■■■□□ 2.51
SOX2-201ENST00000325404 CEP162Q5TB80 1403 aa30.7■■■□□ 2.5
SOX2-201ENST00000325404 CSRNP3Q8WYN3 585 aa30.64■■■□□ 2.5
SOX2-201ENST00000325404 CADPSQ9ULU8 1353 aa30.58■■■□□ 2.49
SOX2-201ENST00000325404 GOLGA3Q08378 1498 aa30.55■■■□□ 2.48
SOX2-201ENST00000325404 TOP2BQ02880 1626 aa30.54■■■□□ 2.48
SOX2-201ENST00000325404 PRDM2Q13029 1718 aa30.52■■■□□ 2.48
SOX2-201ENST00000325404 RUSC2Q8N2Y8 1516 aa30.49■■■□□ 2.47
SOX2-201ENST00000325404 BIVM-ERCC5R4GMW8 1640 aa30.48■■■□□ 2.47
SOX2-201ENST00000325404 KIF21BO75037 1637 aa30.41■■■□□ 2.46
SOX2-201ENST00000325404 CCER1Q8TC90 406 aaPredicted RBP30.4■■■□□ 2.46
SOX2-201ENST00000325404 CEP164Q9UPV0 1460 aa30.4■■■□□ 2.46
SOX2-201ENST00000325404 CUX1P39880 1505 aa30.4■■■□□ 2.46
SOX2-201ENST00000325404 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.37■■■□□ 2.45
SOX2-201ENST00000325404 UBTFP17480 764 aaKnown RBP30.36■■■□□ 2.45
SOX2-201ENST00000325404 FANCD2Q9BXW9 1451 aa30.25■■■□□ 2.43
SOX2-201ENST00000325404 NESP48681 1621 aa30.21■■■□□ 2.43
SOX2-201ENST00000325404 LAMC3Q9Y6N6 1575 aa30.2■■■□□ 2.42
SOX2-201ENST00000325404 DNAJC5BQ9UF47 199 aa30.18■■■□□ 2.42
SOX2-201ENST00000325404 CLIP1P30622 1438 aa30.12■■■□□ 2.41
SOX2-201ENST00000325404 VPS8Q8N3P4 1428 aa30.08■■■□□ 2.41
SOX2-201ENST00000325404 KIF27Q86VH2 1401 aa30.07■■■□□ 2.4
SOX2-201ENST00000325404 FGD5Q6ZNL6 1462 aa30.03■■■□□ 2.4
SOX2-201ENST00000325404 DNMBPQ6XZF7 1577 aa30.01■■■□□ 2.39
SOX2-201ENST00000325404 PDS5BQ9NTI5 1447 aa30■■■□□ 2.39
SOX2-201ENST00000325404 RAPGEF2Q9Y4G8 1499 aa30■■■□□ 2.39
SOX2-201ENST00000325404 TTBK1Q5TCY1 1321 aaPredicted RBP29.99■■■□□ 2.39
SOX2-201ENST00000325404 ERICH3Q5RHP9 1530 aa29.95■■■□□ 2.38
SOX2-201ENST00000325404 TOPBP1Q92547 1522 aa29.95■■■□□ 2.38
SOX2-201ENST00000325404 PRXQ9BXM0 1461 aa29.93■■■□□ 2.38
SOX2-201ENST00000325404 SCAF1Q9H7N4 1312 aaKnown RBP29.92■■■□□ 2.38
SOX2-201ENST00000325404 CUX2O14529 1486 aa29.92■■■□□ 2.38
SOX2-201ENST00000325404 DIEXFQ68CQ4 756 aaKnown RBP29.9■■■□□ 2.38
SOX2-201ENST00000325404 URB2Q14146 1524 aaKnown RBP29.84■■■□□ 2.37
SOX2-201ENST00000325404 POLA1P09884 1462 aaPredicted RBP29.83■■■□□ 2.37
SOX2-201ENST00000325404 APLP2Q06481 763 aa29.81■■■□□ 2.36
SOX2-201ENST00000325404 KIF21AQ7Z4S6 1674 aa29.8■■■□□ 2.36
SOX2-201ENST00000325404 PELP1Q8IZL8 1130 aaKnown RBP29.77■■■□□ 2.36
SOX2-201ENST00000325404 ACIN1Q9UKV3 1341 aaKnown RBP29.76■■■□□ 2.35
SOX2-201ENST00000325404 IGF1RP08069 1367 aa29.76■■■□□ 2.35
SOX2-201ENST00000325404 RAD54L2Q9Y4B4 1467 aa29.76■■■□□ 2.35
SOX2-201ENST00000325404 ABCA10Q8WWZ4 1543 aa29.75■■■□□ 2.35
SOX2-201ENST00000325404 ZNF316A6NFI3 1004 aaPredicted RBP29.75■■■□□ 2.35
SOX2-201ENST00000325404 CENPBP07199 599 aaPredicted RBP29.65■■■□□ 2.34
SOX2-201ENST00000325404 HNRNPUL2Q1KMD3 747 aaKnown RBP29.65■■■□□ 2.34
SOX2-201ENST00000325404 ARAP1Q96P48 1450 aa29.64■■■□□ 2.34
SOX2-201ENST00000325404 CARMIL1Q5VZK9 1371 aa29.63■■■□□ 2.33
SOX2-201ENST00000325404 MRC2Q9UBG0 1479 aa29.58■■■□□ 2.33
SOX2-201ENST00000325404 CLSPNQ9HAW4 1339 aa29.58■■■□□ 2.33
SOX2-201ENST00000325404 NEUROD1Q13562 356 aa29.58■■■□□ 2.33
SOX2-201ENST00000325404 WDR97A6NE52 1622 aa29.57■■■□□ 2.32
SOX2-201ENST00000325404 RANGAP1P46060 587 aaPredicted RBP29.55■■■□□ 2.32
SOX2-201ENST00000325404 TDRD9Q8NDG6 1382 aaKnown RBP29.46■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms