RNA–Protein interactions for RNA: ENST00000447419.6

PTX4-203, Transcript of pentraxin 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTX4, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4-203ENST00000447419 NISCHQ9Y2I1 1504 aa49.64■■■■■ 5.54
PTX4-203ENST00000447419 CCDC180Q9P1Z9 1646 aa43.94■■■■■ 4.63
PTX4-203ENST00000447419 ABCC9O60706 1549 aa43.31■■■■■ 4.52
PTX4-203ENST00000447419 DCAF8L2P0C7V8 631 aa41.79■■■■■ 4.28
PTX4-203ENST00000447419 RB1CC1Q8TDY2 1594 aa41.45■■■■■ 4.23
PTX4-203ENST00000447419 NACADO15069 1562 aa41.37■■■■■ 4.21
PTX4-203ENST00000447419 ZCCHC6Q5VYS8 1495 aaKnown RBP41.34■■■■■ 4.21
PTX4-203ENST00000447419 MYO15BQ96JP2 1530 aa41.02■■■■■ 4.16
PTX4-203ENST00000447419 DCAF1Q9Y4B6 1507 aa40.91■■■■■ 4.14
PTX4-203ENST00000447419 PABPN1Q86U42 306 aaKnown RBP eCLIP40.58■■■■■ 4.09
PTX4-203ENST00000447419 UNC13AQ9UPW8 1703 aa40.51■■■■■ 4.08
PTX4-203ENST00000447419 SCRIBQ14160 1630 aa40.38■■■■■ 4.06
PTX4-203ENST00000447419 BICRAQ9NZM4 1560 aa40.26■■■■■ 4.04
PTX4-203ENST00000447419 DNAJC5BQ9UF47 199 aa39.8■■■■□ 3.96
PTX4-203ENST00000447419 SHROOM4Q9ULL8 1493 aa39.6■■■■□ 3.93
PTX4-203ENST00000447419 EIF4G1Q04637 1599 aaKnown RBP39.2■■■■□ 3.87
PTX4-203ENST00000447419 CC2D2AQ9P2K1 1620 aa39.06■■■■□ 3.84
PTX4-203ENST00000447419 CECR2Q9BXF3 1484 aa38.83■■■■□ 3.81
PTX4-203ENST00000447419 SMARCA4P51532 1647 aa38.5■■■■□ 3.75
PTX4-203ENST00000447419 BAZ1AQ9NRL2 1556 aaPredicted RBP38.43■■■■□ 3.74
PTX4-203ENST00000447419 MROH2BQ7Z745 1585 aa38.35■■■■□ 3.73
PTX4-203ENST00000447419 ATAD2BQ9ULI0 1458 aa38.32■■■■□ 3.72
PTX4-203ENST00000447419 NCAPD3P42695 1498 aa38.22■■■■□ 3.71
PTX4-203ENST00000447419 SMARCA2P51531 1590 aa38.19■■■■□ 3.7
PTX4-203ENST00000447419 BAZ1BQ9UIG0 1483 aaKnown RBP38.02■■■■□ 3.68
PTX4-203ENST00000447419 PEG3Q9GZU2 1588 aa38.01■■■■□ 3.68
PTX4-203ENST00000447419 HMGXB3Q12766 1538 aa38■■■■□ 3.67
PTX4-203ENST00000447419 WIZO95785 1651 aa37.92■■■■□ 3.66
PTX4-203ENST00000447419 RSF1Q96T23 1441 aaPredicted RBP37.9■■■■□ 3.66
PTX4-203ENST00000447419 NESP48681 1621 aa37.5■■■■□ 3.59
PTX4-203ENST00000447419 TOP2AP11388 1531 aaKnown RBP37.44■■■■□ 3.58
PTX4-203ENST00000447419 ERCC6Q03468 1493 aa37.28■■■■□ 3.56
PTX4-203ENST00000447419 SUPT5HO00267 1087 aaKnown RBP37.2■■■■□ 3.55
PTX4-203ENST00000447419 LAMC3Q9Y6N6 1575 aa37.18■■■■□ 3.54
PTX4-203ENST00000447419 CADPSQ9ULU8 1353 aa37.17■■■■□ 3.54
PTX4-203ENST00000447419 CCDC88BA6NC98 1476 aa37.08■■■■□ 3.53
PTX4-203ENST00000447419 PDS5BQ9NTI5 1447 aa36.99■■■■□ 3.51
PTX4-203ENST00000447419 CFTRP13569 1480 aa36.93■■■■□ 3.5
PTX4-203ENST00000447419 KIF21AQ7Z4S6 1674 aa36.92■■■■□ 3.5
PTX4-203ENST00000447419 FANCD2Q9BXW9 1451 aa36.79■■■■□ 3.48
PTX4-203ENST00000447419 THOC2Q8NI27 1593 aaKnown RBP36.76■■■■□ 3.47
PTX4-203ENST00000447419 CUX2O14529 1486 aa36.71■■■■□ 3.47
PTX4-203ENST00000447419 CEP164Q9UPV0 1460 aa36.71■■■■□ 3.47
PTX4-203ENST00000447419 MRC2Q9UBG0 1479 aa36.63■■■■□ 3.45
PTX4-203ENST00000447419 PRDM2Q13029 1718 aa36.49■■■■□ 3.43
PTX4-203ENST00000447419 WDR62O43379 1518 aa36.47■■■■□ 3.43
PTX4-203ENST00000447419 URB2Q14146 1524 aaKnown RBP36.43■■■■□ 3.42
PTX4-203ENST00000447419 TOPBP1Q92547 1522 aa36.18■■■■□ 3.38
PTX4-203ENST00000447419 DNMBPQ6XZF7 1577 aa36.09■■■■□ 3.37
PTX4-203ENST00000447419 ABCC8Q09428 1581 aa36.03■■■■□ 3.36
PTX4-203ENST00000447419 CUX1P39880 1505 aa35.96■■■■□ 3.35
PTX4-203ENST00000447419 IFT140Q96RY7 1462 aa35.9■■■■□ 3.34
PTX4-203ENST00000447419 POLA1P09884 1462 aaPredicted RBP35.89■■■■□ 3.34
PTX4-203ENST00000447419 ZNF608Q9ULD9 1512 aaPredicted RBP35.87■■■■□ 3.33
PTX4-203ENST00000447419 FGD5Q6ZNL6 1462 aa35.83■■■■□ 3.33
PTX4-203ENST00000447419 RAD54L2Q9Y4B4 1467 aa35.83■■■■□ 3.33
PTX4-203ENST00000447419 SOGA1O94964 1423 aa35.76■■■■□ 3.32
PTX4-203ENST00000447419 TARBP1Q13395 1621 aaKnown RBP35.74■■■■□ 3.31
PTX4-203ENST00000447419 WRNQ14191 1432 aaPredicted RBP eCLIP35.73■■■■□ 3.31
PTX4-203ENST00000447419 AQRO60306 1485 aaKnown RBP eCLIP35.69■■■■□ 3.3
PTX4-203ENST00000447419 DNAJC5Q9H3Z4 198 aa35.67■■■■□ 3.3
PTX4-203ENST00000447419 SYNJ1O43426 1573 aa35.65■■■■□ 3.3
PTX4-203ENST00000447419 TDRD9Q8NDG6 1382 aaKnown RBP35.65■■■■□ 3.3
PTX4-203ENST00000447419 EIF4G3O43432 1585 aaKnown RBP35.63■■■■□ 3.3
PTX4-203ENST00000447419 TOP2BQ02880 1626 aa35.56■■■■□ 3.28
PTX4-203ENST00000447419 BIVM-ERCC5R4GMW8 1640 aa35.52■■■■□ 3.28
PTX4-203ENST00000447419 WDR97A6NE52 1622 aa35.4■■■■□ 3.26
PTX4-203ENST00000447419 ABCA10Q8WWZ4 1543 aa35.4■■■■□ 3.26
PTX4-203ENST00000447419 FBLN2P98095 1184 aa35.36■■■■□ 3.25
PTX4-203ENST00000447419 GAPVD1Q14C86 1478 aa35.33■■■■□ 3.25
PTX4-203ENST00000447419 OSCARQ8IYS5 282 aa35.32■■■■□ 3.25
PTX4-203ENST00000447419 SNAPC4Q5SXM2 1469 aa35.32■■■■□ 3.24
PTX4-203ENST00000447419 GRIN2BQ13224 1484 aa35.28■■■■□ 3.24
PTX4-203ENST00000447419 ABCA5Q8WWZ7 1642 aa35.25■■■■□ 3.23
PTX4-203ENST00000447419 PBRM1Q86U86 1689 aa35.18■■■■□ 3.22
PTX4-203ENST00000447419 CHD1O14646 1710 aa35.16■■■■□ 3.22
PTX4-203ENST00000447419 CHMP7Q8WUX9 453 aaPredicted RBP35.15■■■■□ 3.22
PTX4-203ENST00000447419 MAGI1Q96QZ7 1491 aaPredicted RBP35.14■■■■□ 3.22
PTX4-203ENST00000447419 SYNJ2O15056 1496 aa35.04■■■■□ 3.2
PTX4-203ENST00000447419 TRIM41Q8WV44 630 aa35.01■■■■□ 3.19
PTX4-203ENST00000447419 KIF27Q86VH2 1401 aa34.95■■■■□ 3.19
PTX4-203ENST00000447419 ADAMTS12P58397 1594 aa34.94■■■■□ 3.18
PTX4-203ENST00000447419 ERICH3Q5RHP9 1530 aa34.94■■■■□ 3.18
PTX4-203ENST00000447419 FHAD1B1AJZ9 1412 aa34.89■■■■□ 3.18
PTX4-203ENST00000447419 GRIN2AQ12879 1464 aa34.86■■■■□ 3.17
PTX4-203ENST00000447419 IGF1RP08069 1367 aa34.84■■■■□ 3.17
PTX4-203ENST00000447419 RUSC2Q8N2Y8 1516 aa34.8■■■■□ 3.16
PTX4-203ENST00000447419 CLASP1Q7Z460 1538 aa34.76■■■■□ 3.16
PTX4-203ENST00000447419 ARHGEF11O15085 1522 aa34.74■■■■□ 3.15
PTX4-203ENST00000447419 RIMBP3CA6NJZ7 1639 aa34.73■■■■□ 3.15
PTX4-203ENST00000447419 RIMBP3BA6NNM3 1639 aa34.73■■■■□ 3.15
PTX4-203ENST00000447419 RIMBP3Q9UFD9 1639 aa34.73■■■■□ 3.15
PTX4-203ENST00000447419 CEP170Q5SW79 1584 aa34.71■■■■□ 3.15
PTX4-203ENST00000447419 NUP160Q12769 1436 aa34.66■■■■□ 3.14
PTX4-203ENST00000447419 CARMIL1Q5VZK9 1371 aa34.64■■■■□ 3.14
PTX4-203ENST00000447419 CHIC1Q5VXU3 224 aa34.6■■■■□ 3.13
PTX4-203ENST00000447419 CUL7Q14999 1698 aa34.6■■■■□ 3.13
PTX4-203ENST00000447419 CYB5RLQ6IPT4 315 aa34.55■■■■□ 3.12
PTX4-203ENST00000447419 ARAP1Q96P48 1450 aa34.49■■■■□ 3.11
PTX4-203ENST00000447419 FAM9AQ8IZU1 332 aaPredicted RBP34.46■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms