Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
SHOX2O60902 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SHOX2O60902 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.39■□□□□ 0.85
SHOX2O60902 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHOX2O60902 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 AP000997.3-201ENST00000623333 2250 ntBASIC20.38■□□□□ 0.85
SHOX2O60902 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 CROCCP3-202ENST00000420820 1947 ntBASIC20.38■□□□□ 0.85
SHOX2O60902 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SHOX2O60902 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.38■□□□□ 0.85
SHOX2O60902 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHOX2O60902 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.38■□□□□ 0.85
SHOX2O60902 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.38■□□□□ 0.85
SHOX2O60902 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.38■□□□□ 0.85
SHOX2O60902 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.37■□□□□ 0.85
SHOX2O60902 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.37■□□□□ 0.85
SHOX2O60902 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SHOX2O60902 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.37■□□□□ 0.85
SHOX2O60902 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SHOX2O60902 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.37■□□□□ 0.85
SHOX2O60902 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 AL390961.4-201ENST00000623958 2535 ntBASIC20.37■□□□□ 0.85
SHOX2O60902 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.37■□□□□ 0.85
SHOX2O60902 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHOX2O60902 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SHOX2O60902 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
SHOX2O60902 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.36■□□□□ 0.85
SHOX2O60902 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
SHOX2O60902 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHOX2O60902 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SHOX2O60902 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 AC021242.3-201ENST00000607598 1377 ntBASIC20.35■□□□□ 0.85
SHOX2O60902 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.35■□□□□ 0.85
SHOX2O60902 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SHOX2O60902 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SHOX2O60902 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.35■□□□□ 0.85
SHOX2O60902 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.35■□□□□ 0.85
SHOX2O60902 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.35■□□□□ 0.85
SHOX2O60902 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SHOX2O60902 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SHOX2O60902 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SHOX2O60902 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHOX2O60902 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SHOX2O60902 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SHOX2O60902 AC135050.7-201ENST00000624508 2218 ntBASIC20.34■□□□□ 0.85
SHOX2O60902 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.34■□□□□ 0.85
SHOX2O60902 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHOX2O60902 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHOX2O60902 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SHOX2O60902 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.34■□□□□ 0.85
SHOX2O60902 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHOX2O60902 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHOX2O60902 AC009113.1-201ENST00000570267 2443 ntBASIC20.34■□□□□ 0.85
SHOX2O60902 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHOX2O60902 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.34■□□□□ 0.85
SHOX2O60902 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHOX2O60902 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHOX2O60902 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHOX2O60902 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHOX2O60902 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.33■□□□□ 0.85
SHOX2O60902 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHOX2O60902 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHOX2O60902 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.33■□□□□ 0.85
SHOX2O60902 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.33■□□□□ 0.85
SHOX2O60902 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.33■□□□□ 0.85
SHOX2O60902 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.33■□□□□ 0.85
SHOX2O60902 BX664725.1-201ENST00000438252 379 ntBASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms