Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 AC080128.1-201ENST00000474389 1917 ntBASIC4.45□□□□□ -1.73e-8■■■■□ 25.5
UPF1Q92900 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC21.24■□□□□ 0.992e-19■■■■□ 25.5
UPF1Q92900 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.82e-19■■■■□ 25.5
UPF1Q92900 COTL1-205ENST00000567278 5330 ntTSL 211.23□□□□□ -0.612e-19■■■■□ 25.5
UPF1Q92900 AES-203ENST00000585557 491 ntTSL 540.55■■■■■ 4.086e-7■■■■□ 25.5
UPF1Q92900 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.013e-7■■■■□ 25.5
UPF1Q92900 DDR1-232ENST00000418800 3588 ntAPPRIS P3 TSL 2 BASIC11.38□□□□□ -0.591e-7■■■■□ 25.5
UPF1Q92900 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.831e-6■■■■□ 25.5
UPF1Q92900 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC20.58■□□□□ 0.897e-16■■■■□ 25.5
UPF1Q92900 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC17.74■□□□□ 0.435e-16■■■■□ 25.5
UPF1Q92900 ARCN1-205ENST00000614498 2238 ntTSL 1 (best) BASIC12.8□□□□□ -0.365e-16■■■■□ 25.5
UPF1Q92900 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.115e-16■■■■□ 25.5
UPF1Q92900 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.34□□□□□ -1.235e-16■■■■□ 25.5
UPF1Q92900 MICAL2-217ENST00000527546 3358 ntTSL 5 BASIC10.59□□□□□ -0.713e-7■■■■□ 25.5
UPF1Q92900 MESD-205ENST00000560244 981 ntTSL 514.31□□□□□ -0.127e-7■■■■□ 25.4
UPF1Q92900 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.062e-6■■■■□ 25.4
UPF1Q92900 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.954e-13■■■■□ 25.4
UPF1Q92900 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.69■□□□□ 0.94e-13■■■■□ 25.4
UPF1Q92900 NRBP1-206ENST00000460499 2561 ntTSL 219.59■□□□□ 0.734e-13■■■■□ 25.4
UPF1Q92900 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.174e-13■■■■□ 25.4
UPF1Q92900 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.38■□□□□ 0.693e-7■■■■□ 25.4
UPF1Q92900 CMTM4-203ENST00000561680 618 ntTSL 216.1■□□□□ 0.173e-7■■■■□ 25.4
UPF1Q92900 CMTM4-205ENST00000581487 7026 nt7.41□□□□□ -1.223e-7■■■■□ 25.4
UPF1Q92900 SMG7-212ENST00000507469 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.557e-10■■■■□ 25.4
UPF1Q92900 SMG7-209ENST00000495321 556 ntTSL 310.7□□□□□ -0.77e-10■■■■□ 25.4
UPF1Q92900 SMG7-201ENST00000347615 5788 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.767e-10■■■■□ 25.4
UPF1Q92900 SMG7-215ENST00000515829 5629 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.817e-10■■■■□ 25.4
UPF1Q92900 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.067e-10■■■■□ 25.4
UPF1Q92900 CWF19L1-206ENST00000478047 2694 ntTSL 212.33□□□□□ -0.449e-11■■■■□ 25.4
UPF1Q92900 CWF19L1-204ENST00000468709 2402 ntTSL 211.62□□□□□ -0.559e-11■■■■□ 25.4
UPF1Q92900 CWF19L1-207ENST00000482452 1606 ntTSL 510.15□□□□□ -0.789e-11■■■■□ 25.4
UPF1Q92900 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.266e-8■■■■□ 25.4
UPF1Q92900 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.475e-7■■■■□ 25.4
UPF1Q92900 GALM-201ENST00000272252 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.424e-8■■■■□ 25.4
UPF1Q92900 GALM-204ENST00000434934 724 ntTSL 35.82□□□□□ -1.484e-8■■■■□ 25.4
UPF1Q92900 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC29.27■■■□□ 2.281e-8■■■■□ 25.4
UPF1Q92900 BCL2L2-205ENST00000557236 631 ntTSL 528.94■■■□□ 2.221e-7■■■■□ 25.4
UPF1Q92900 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.14e-9■■■■□ 25.4
UPF1Q92900 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.181e-7■■■■□ 25.4
UPF1Q92900 BCL2L2-206ENST00000557579 596 ntTSL 321.29■■□□□ 11e-7■■■■□ 25.4
UPF1Q92900 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.691e-7■■■■□ 25.4
UPF1Q92900 BCL2L2-203ENST00000554635 545 ntTSL 1 (best)18.6■□□□□ 0.571e-7■■■■□ 25.4
UPF1Q92900 SNX27-202ENST00000368841 7070 ntTSL 1 (best)17.95■□□□□ 0.461e-7■■■■□ 25.4
UPF1Q92900 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.461e-7■■■■□ 25.4
UPF1Q92900 BCL2L2-202ENST00000553824 548 ntTSL 417.17■□□□□ 0.341e-7■■■■□ 25.4
UPF1Q92900 NDUFV3-201ENST00000340344 4676 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.91e-7■■■■□ 25.4
UPF1Q92900 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.673e-9■■■■□ 25.4
UPF1Q92900 DPP9-201ENST00000262960 4295 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.512e-8■■■■□ 25.4
UPF1Q92900 DPP9-203ENST00000594671 3851 ntTSL 5 BASIC9.61□□□□□ -0.872e-8■■■■□ 25.4
UPF1Q92900 TMEM242-202ENST00000400788 4043 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.796e-8■■■■□ 25.4
UPF1Q92900 NSFL1C-213ENST00000555944 2588 ntTSL 219.35■□□□□ 0.691e-6■■■■□ 25.4
UPF1Q92900 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.07■□□□□ 0.481e-6■■■■□ 25.4
UPF1Q92900 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.03■□□□□ 0.321e-6■■■■□ 25.4
UPF1Q92900 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.071e-6■■■■□ 25.4
UPF1Q92900 NSFL1C-204ENST00000461211 3799 ntTSL 57.45□□□□□ -1.221e-6■■■■□ 25.4
UPF1Q92900 FUT11-204ENST00000489264 1635 ntTSL 211.56□□□□□ -0.562e-8■■■■□ 25.4
UPF1Q92900 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.83■□□□□ 0.451e-7■■■■□ 25.4
UPF1Q92900 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.74■□□□□ 0.431e-7■■■■□ 25.4
UPF1Q92900 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.93■□□□□ 0.31e-7■■■■□ 25.4
UPF1Q92900 HNF1A-207ENST00000540108 3039 ntTSL 1 (best)16.06■□□□□ 0.161e-7■■■■□ 25.4
UPF1Q92900 HNF1A-214ENST00000560968 3030 ntTSL 1 (best)15.16■□□□□ 0.021e-7■■■■□ 25.4
UPF1Q92900 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.061e-7■■■■□ 25.4
UPF1Q92900 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC14.17□□□□□ -0.141e-7■■■■□ 25.4
UPF1Q92900 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.091e-6■■■■□ 25.3
UPF1Q92900 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.051e-6■■■■□ 25.3
UPF1Q92900 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.083e-7■■■■□ 25.3
UPF1Q92900 LRRC8A-205ENST00000492784 717 ntTSL 325.62■■□□□ 1.692e-8■■■■□ 25.3
UPF1Q92900 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.148e-12■■■■□ 25.3
UPF1Q92900 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.377e-7■■■■□ 25.3
UPF1Q92900 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.6□□□□□ -0.237e-7■■■■□ 25.3
UPF1Q92900 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.13e-19■■■■□ 25.3
UPF1Q92900 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC23.73■■□□□ 1.392e-12■■■■□ 25.3
UPF1Q92900 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.252e-12■■■■□ 25.3
UPF1Q92900 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.149e-7■■■■□ 25.3
UPF1Q92900 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC27.79■■■□□ 2.049e-7■■■■□ 25.3
UPF1Q92900 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC26.85■■□□□ 1.899e-7■■■■□ 25.3
UPF1Q92900 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.68■□□□□ 0.429e-7■■■■□ 25.3
UPF1Q92900 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.319e-7■■■■□ 25.3
UPF1Q92900 HSPA4-201ENST00000304858 4825 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.417e-7■■■■□ 25.3
UPF1Q92900 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.563e-8■■■■□ 25.3
UPF1Q92900 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.13e-7■■■■□ 25.3
UPF1Q92900 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC9.95□□□□□ -0.823e-7■■■■□ 25.3
UPF1Q92900 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC8.47□□□□□ -1.053e-7■■■■□ 25.3
UPF1Q92900 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.82■□□□□ 0.282e-25■■■■□ 25.3
UPF1Q92900 CALU-201ENST00000249364 3357 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.062e-25■■■■□ 25.3
UPF1Q92900 CALU-206ENST00000542996 4225 ntTSL 1 (best) BASIC10.66□□□□□ -0.72e-25■■■■□ 25.3
UPF1Q92900 CALU-204ENST00000493278 589 ntTSL 37.42□□□□□ -1.222e-25■■■■□ 25.3
UPF1Q92900 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC33.92■■■■□ 3.024e-7■■■■□ 25.3
UPF1Q92900 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC33.64■■■□□ 2.984e-7■■■■□ 25.3
UPF1Q92900 WBP1-204ENST00000428943 989 ntTSL 533.18■■■□□ 2.94e-7■■■■□ 25.3
UPF1Q92900 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC32.14■■■□□ 2.744e-7■■■■□ 25.3
UPF1Q92900 WBP1-209ENST00000473467 847 ntTSL 232.08■■■□□ 2.734e-7■■■■□ 25.3
UPF1Q92900 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.78■■■□□ 2.684e-7■■■■□ 25.3
UPF1Q92900 WBP1-214ENST00000494741 1069 ntTSL 330.27■■■□□ 2.444e-7■■■■□ 25.3
UPF1Q92900 WBP1-211ENST00000484744 2047 ntTSL 223.47■■□□□ 1.354e-7■■■■□ 25.3
UPF1Q92900 WBP1-208ENST00000470536 765 ntTSL 223.08■■□□□ 1.294e-7■■■■□ 25.3
UPF1Q92900 WBP1-212ENST00000490120 919 ntTSL 220.17■□□□□ 0.824e-7■■■■□ 25.3
UPF1Q92900 INO80B-WBP1-201ENST00000441673 1668 ntAPPRIS ALT2 TSL 520.1■□□□□ 0.814e-7■■■■□ 25.3
UPF1Q92900 IP6K1-201ENST00000321599 4456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.034e-7■■■■□ 25.3
UPF1Q92900 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC12.48□□□□□ -0.414e-7■■■■□ 25.3
Retrieved 100 of 15,879 protein–RNA pairs in 160.6 ms